RNA id: AMCG00005351


Basic Information

Item Value
RNA id AMCG00005351
length 819
RNA type mRNA
GC content 0.67
exon number 4
gene id AMCG00005351
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 21966858 ~ 21969692 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCGCCCCCATCGGGACCGTCTCTCCCCCCCACCGCACGGCTGCTGTCCTGGCCAGCATCATCTCTGCCCTGCGATGCCTTTCACTACACCTGGCCTGCGCTGAGGCAGGGGCTGCGCGTCTCTCGTGGATCGAGACTTTCACAGGCAAGTACTTCCACAGCCGGGACTACAAGAGTCCCGAGGAGTTCAGAGGGAAGAGCGTGGTGGTGATCGGCATCGGCAACTCTGGAGGGGACATCGCTGTGGAGCTGAGCCACGTGACCGACAAGCTGTTCCTCAGTACCCGGCGGGGGGCGTGGATTCTGAACCGCGTGGGCGCGGGAGGCGTCCCAGGAGACATGCAGTTTGGCCGTGTGGCCAGGACGCTGCAGGGTGTGCTGCCCCTGGGCTTCTACAGCAGCCTGGGCGAGAAGCACCTCAACAGCAGGTTTAACCACAAGCTGTACTCCCTGCAGCCCAAGCACAGGCTGTTCAGTCAGCACCCCACAGTGAACGACGAGCTGCCGAACCGGATCCTGTCGGGCCGGGTGCAGGTGAGGCCCAACGTGCGGGAGTTCCGGGGGGGGGCGGTGGTGTTCGAGGACGGCAGCGTGGAGGAGGGGGTGCACGCCGTCGTCTTCGCCACGGGGTACCGCTTCTCCTTCCCCTTCCTGTCCGACTCGGTGCTGCCCGTGCAGGACAACCGGGCGACCCTGTACAAGCACGTGTTCCCGCCCGCGCTGCAGCGCCACACGCTGGCCGTGGTGGGCCTGGTCCAGCCGCTCGGAGCCATCATGCCCATCGCAGAGATGCAGGCGCGCTGGGCCACCCGCGTCTTC

Function

GO: NA

KEGG:

id description
ko00260 Glycine, serine and threonine metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184988 lncRNA upstream 9813 21956601 ~ 21957045 (+) True G147027
TU184985 lncRNA upstream 16271 21950328 ~ 21950587 (+) True G147024
TU184983 lncRNA upstream 18240 21948086 ~ 21948618 (+) True G147022
TU184849 lncRNA upstream 221407 21744879 ~ 21745451 (+) True G146928
TU184834 lncRNA upstream 254075 21710357 ~ 21712783 (+) True G146915
TU185037 lncRNA downstream 111978 22081644 ~ 22087344 (+) True G147066
AMCG00005350 mRNA upstream 29531 21932366 ~ 21937327 (+) True AMCG00005350
AMCG00005348 mRNA upstream 38385 21920884 ~ 21928473 (+) True AMCG00005348
AMCG00005349 mRNA upstream 46961 21917115 ~ 21919897 (+) True AMCG00005349
AMCG00005345 mRNA upstream 79290 21883199 ~ 21887568 (+) True AMCG00005345
AMCG00005344 mRNA upstream 88324 21873027 ~ 21878534 (+) True AMCG00005344
AMCG00005356 mRNA downstream 51196 22020862 ~ 22024488 (+) True AMCG00005356
AMCG00005358 mRNA downstream 54857 22024523 ~ 22031098 (+) True AMCG00005358
AMCG00005357 mRNA downstream 90543 22060209 ~ 22061467 (+) True AMCG00005357
AMCG00005364 mRNA downstream 146823 22116489 ~ 22122971 (+) True AMCG00005364
AMCG00005366 mRNA downstream 154116 22123782 ~ 22130249 (+) True AMCG00005366
TU184986 other upstream 13976 21952569 ~ 21952882 (+) True G147025
TU184980 other upstream 18867 21945558 ~ 21947991 (+) True G147021
TU184903 other upstream 79413 21885270 ~ 21887445 (+) False AMCG00005345
TU184875 other upstream 118722 21811732 ~ 21848136 (+) True G146952
TU184830 other upstream 262464 21680708 ~ 21704394 (+) True AMCG00005340
TU185050 other downstream 169521 22139187 ~ 22144833 (+) False AMCG00005365
TU185051 other downstream 169521 22139187 ~ 22144833 (+) False AMCG00005365

Expression Profile