RNA id: AMCG00005352


Basic Information

Item Value
RNA id AMCG00005352
length 531
RNA type mRNA
GC content 0.62
exon number 3
gene id AMCG00005352
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 21959594 ~ 21960501 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTCGGCGCATTGCGATCATCGGCGGGGGCAGCTCGGGGCTGGCCTGTGTAAAGTGCTGCCTGGACGAGGGGCTGGAGCCGGTGTGCTTCGAGAGCAGCGAGGACATCGGGGGGCTCTGGAGGTTCAAGGAGACCCCCGAGCCGGACCGGGCCAGTATCTATCACTCTGTCATCATCAACACCTCCAAGGAGAGAATGTGCTTCAGCGACTTCCCGATCCCGGCGCACTTCCCCAACTACATGCACCACTCGCTCATCATGGACTACTTCCGCATGTACGCCGAGCACTTCCAGCTGCTCCCGCACATCCGCTTCCAGACCCGTGTGCGCAGTGTGGAGCAGCGCCCTGACTTCTCTCGCTCGGGGCAGTGGCAGGTGGTCACAGTGGATAGGGAGGGGCGGGAGGAGAGCTCTGTGTTCGATGGCGTGCTGGTCTGCACGGGGCACCACGTCCACCCACACCTGCCCCTCCACGACTTCCCAGGTGAGGAAGACAGGGAATCTCTATCAGCACAAACCTTGCACTAG

Function

GO: NA

KEGG:

id description
ko00260 Glycine, serine and threonine metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184873 lncRNA downstream 152288 21806980 ~ 21807306 (-) True G146951
TU184859 lncRNA downstream 213786 21745544 ~ 21745808 (-) False AMCG00005343
TU184798 lncRNA downstream 353059 21589996 ~ 21606535 (-) True G146891
TU184761 lncRNA downstream 398133 21560049 ~ 21561461 (-) True G146857
TU184738 lncRNA downstream 471883 21485949 ~ 21487711 (-) True AMCG00005333
TU185082 lncRNA upstream 21557 21982058 ~ 21982521 (-) False AMCG00005363
TU185126 lncRNA upstream 171765 22132266 ~ 22180932 (-) True G147122
TU185169 lncRNA upstream 268698 22229199 ~ 22229991 (-) True G147156
TU185197 lncRNA upstream 462488 22422989 ~ 22423230 (-) True G147184
TU185198 lncRNA upstream 465224 22425725 ~ 22426106 (-) True G147185
AMCG00005353 mRNA downstream 2653 21937448 ~ 21956941 (-) True AMCG00005353
AMCG00005354 mRNA downstream 43295 21911879 ~ 21916299 (-) True AMCG00005354
AMCG00005355 mRNA downstream 49308 21891314 ~ 21910286 (-) True AMCG00005355
AMCG00005346 mRNA downstream 98163 21845044 ~ 21861431 (-) True AMCG00005346
AMCG00005347 mRNA downstream 118278 21838826 ~ 21841316 (-) True AMCG00005347
AMCG00005363 mRNA upstream 10922 21971423 ~ 21972456 (-) False AMCG00005363
AMCG00005361 mRNA upstream 22300 21982801 ~ 21995515 (-) True AMCG00005361
AMCG00005362 mRNA upstream 72435 22032936 ~ 22054967 (-) True AMCG00005362
AMCG00005360 mRNA upstream 101232 22061733 ~ 22078827 (-) True AMCG00005360
AMCG00005359 mRNA upstream 125793 22086294 ~ 22087753 (-) True AMCG00005359
TU184860 other downstream 214141 21744876 ~ 21745453 (-) True G146938
TU184470 other downstream 1348951 20609354 ~ 20610643 (-) True G146618
TU184357 other downstream 1679848 20274391 ~ 20279746 (-) True G146532
TU184245 other downstream 1936087 20020710 ~ 20023507 (-) False AMCG00005256
TU185079 other upstream 10534 21971035 ~ 21982521 (-) True AMCG00005363
TU185101 other upstream 70324 22030825 ~ 22035272 (-) False AMCG00005362
TU185105 other upstream 76094 22036595 ~ 22101862 (-) True G147109
TU185104 other upstream 123216 22083717 ~ 22084944 (-) True G147108
TU185123 other upstream 167406 22127907 ~ 22130549 (-) True G147121

Expression Profile