RNA id: AMCG00005354


Basic Information

Item Value
RNA id AMCG00005354
length 1726
RNA type mRNA
GC content 0.67
exon number 6
gene id AMCG00005354
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 21911879 ~ 21916299 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGTCTGTTGCCGCGCAGCGCCGGCGAGTTCAGCTCGGCCGAGTACTGGGAGCGCTTCTTCTCTCGACGCGGCGACCAGGCGTTCGAGTGGTACGGCGGCTACACGGAGCTGTGCGGGGTTCTGCACAAGTACATCAAACCGCAGGACGAGGTGCTGGTGGTGGGGTGCGGTAACTCGGAGCTCAGTGAGCAGCTGTGGGACGTCGGGTACAAGCGACTGACCAACATCGACCTGAGCGCCACCGCCATCGCCAACATGCAGCAGCGCAACCGGAGCCGCCGGCCCGGCCTTCTGTTCCTGCGCGCTGACGCCACGCAGACCGGGATGGAGGCTGGGCGCTTCCGGGCCGCGCTGGACAAGGGCACGCTGGACGCCATGGCCTCGGAGGAGCGGGGGCAGGATGGGGAGAAGCCGGAAGACGGGAAGGGAGGCCAGGCGGGCAGGATGCTGGCGGAGGTGGGGCGTGTGCTGTGCGTGGGGGGCCGCTACGTGTGCGTGACGCTGGCGCAGGAGCACGTGCTGCAGCTGGCGGTGGAGCACTTCGCCGGGGAGGGCTGGGCCGTCAGGGTGCACTGCCTGGGCGGGCAGGAAGCCGAATCCGACTCCTCCTCATTCGCGCTGCCCGTTTTTGTCCTGGTCTGCACCAAGTTCCGTCAGCCCCCCCCCACGCCGCTGCTGGAGCTGTGCCAGGGTGAGGACGGCCCCCCATGCAGGCTGGCGGCCGTGGCCGAGCTGCTGGCCGCCGTGCGGGACTGCCAGGCCTACGCCCTCCTGCGCAGCCGGCTGCGACATAACACAGACCCCACTCCCTGCCCTGCCCTCACGCTCTGCCACACCCCCTCTGGACGCGCCCGCTTCACCCTGCATGTGGGCCGGGAGTCTGATTGGCTGTACAGTTCCGAGGAGGGGCGTGGCCAGCTGGCGCTGAGTGCGGGCTTCCGCAGGCTGGTTGTCGTGGCCATGCACCGGGACCAGCAGTACAGTGACATGCAGGCTGTCCAATCAGAGCTCTCGCCCATGCCGGACGAGCGTCTGAGTGTCATGCTGGGGGACGGCCTGGAGCACATCAACAAGCTGCACAGCCAGGGTCAGTatgggGACCCCTCTCTGGGCATGAGCTGCCCTCCGCCTGCCTTTGTGGAGACACCCTTCCTGGAGAGAGTCCGGGATCTGCTCACCCCCAGAGGTGTGTTCATGCTGAACCTGGTGTGCCGGGACTCCGTGcggagggagggggtggtggcGCGAGTGCGAGGGCTGTTCCCCTGCGTCCTGTCCCGGGACATCGAGGGCGAGGTGAACGAGGTGCTGCTGTGCCTGCGGGGGGGGGACGCCGAcaccacccccgccccccccagcccTCCTGCCCTGCGCCGTGCCGCCCGTACCCTGCAGGGGGTGCTGGGGGACAAAAACCagccctccccaccccccagcctcgACATCGCGGCCCTGCTGGACAACCTGCACAtcgcctgagagagagagcgagggcaGAGTTGAGCGACacaggggagggagagagagagggatggaagAAGCTTCAGTATTCTGTGTACCTGCAGTCCCTACGTCCCACCCATCAGCTGACTGTCCATGAATGGGGGGTTGTGTGAGCTGTGCAGGGTTACAGAGTGTCCAGTAAACTGCCCTGTTCCTAAAACTGTCCGTCTGTGCCTCATTCTGGTCCATTACTGCtcccccatcacacacacacacacac

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016740 transferase activity molecular_function

KEGG:

id description
K25166 EEF1AKNMT, METTL13; eEF1A lysine and N-terminal methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184873 lncRNA downstream 104573 21806980 ~ 21807306 (-) True G146951
TU184859 lncRNA downstream 166071 21745544 ~ 21745808 (-) False AMCG00005343
TU184798 lncRNA downstream 305344 21589996 ~ 21606535 (-) True G146891
TU184761 lncRNA downstream 350418 21560049 ~ 21561461 (-) True G146857
TU184738 lncRNA downstream 424168 21485949 ~ 21487711 (-) True AMCG00005333
TU185082 lncRNA upstream 65759 21982058 ~ 21982521 (-) False AMCG00005363
TU185126 lncRNA upstream 215967 22132266 ~ 22180932 (-) True G147122
TU185169 lncRNA upstream 312900 22229199 ~ 22229991 (-) True G147156
TU185197 lncRNA upstream 506690 22422989 ~ 22423230 (-) True G147184
TU185198 lncRNA upstream 509426 22425725 ~ 22426106 (-) True G147185
AMCG00005355 mRNA downstream 1593 21891314 ~ 21910286 (-) True AMCG00005355
AMCG00005346 mRNA downstream 50448 21845044 ~ 21861431 (-) True AMCG00005346
AMCG00005347 mRNA downstream 70563 21838826 ~ 21841316 (-) True AMCG00005347
AMCG00005343 mRNA downstream 164081 21745574 ~ 21747798 (-) True AMCG00005343
AMCG00005342 mRNA downstream 167981 21740519 ~ 21743898 (-) True AMCG00005342
AMCG00005353 mRNA upstream 21149 21937448 ~ 21956941 (-) True AMCG00005353
AMCG00005352 mRNA upstream 43295 21959594 ~ 21960501 (-) True AMCG00005352
AMCG00005363 mRNA upstream 55124 21971423 ~ 21972456 (-) False AMCG00005363
AMCG00005361 mRNA upstream 66502 21982801 ~ 21995515 (-) True AMCG00005361
AMCG00005362 mRNA upstream 116637 22032936 ~ 22054967 (-) True AMCG00005362
TU184860 other downstream 166426 21744876 ~ 21745453 (-) True G146938
TU184470 other downstream 1301236 20609354 ~ 20610643 (-) True G146618
TU184357 other downstream 1632133 20274391 ~ 20279746 (-) True G146532
TU184245 other downstream 1888372 20020710 ~ 20023507 (-) False AMCG00005256
TU185079 other upstream 54736 21971035 ~ 21982521 (-) True AMCG00005363
TU185101 other upstream 114526 22030825 ~ 22035272 (-) False AMCG00005362
TU185105 other upstream 120296 22036595 ~ 22101862 (-) True G147109
TU185104 other upstream 167418 22083717 ~ 22084944 (-) True G147108
TU185123 other upstream 211608 22127907 ~ 22130549 (-) True G147121

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00035437 False 3562 mRNA 0.44 8 NC_007131.7 14926881 ~ 14941169 (-)