RNA id: AMCG00005355


Basic Information

Item Value
RNA id AMCG00005355
length 1395
RNA type mRNA
GC content 0.61
exon number 13
gene id AMCG00005355
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 21891314 ~ 21910286 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGGAACCGGGGGATGGAAGACCTGATCCCGCTGGTCAACCGGCTCCAGGACGCCTTCAGCACCATCGGGCAGAGCTGCAACCTCGACCTGCCCCAGATCGCCGTGGTGGGCGGCCAGAGCGCCGGCAAGAGCTCGGTGCTGGAGAACTTCGTGGGGAGGGACTTCCTGCCACGTGGCTCTGGCATCGTCACCCGGAGGCCCCTATTTGCCGAGTTCCTGCACTGTAAGGGGAAGAAGTTCACGGACTTCGATGAGGTGCGCCAGGAGATCGAGGCCGAGACGGAACGGGTGACCGGGGCCAACAAGGGCATCTCCCCCGTGCCCATCAACCTGCGGGTCTTCTCCCCCCACGTGCTGAACCTGACCCTGATCGATCTGCCGGGCATCACCAAGGTGCCGGTGGGGGACCAGCCGGTCGACATTGAGTACCAGATTCGGGACATGATCATGCAGTTCATCTGCCGCGAGAACTGCCTCATCCTGGCCGTCACTCCGGCCAACACGGACCTGGCCAACTCGGACGCGCTGAAGCTGGCCAAGGACGTGGACCCCCAGGgCCAGCGCACTATCGGCGTGATCACAAAGCTGGACCTGATGGACGAAGGCACCGACGCCCGGGACGTCCTGGAGAACAAACTGCTGCCCCTGAGGAGAGgcTACATCGGGGTGGTGAACCGCAGTCAGAAGGACATCGAGGGGAAGAAGGACATTAAGGCAGCGATGGCGGCCGAGAGGAAGTTCTTCCTGTCGCACCCTAAGCTGCAGGCCCAGCTGCTGTCTCTGGACAAGGAGGCTGAGGAGTACAAACACTTCCGCCCCGATGACCCGTCCCGCAAGACCAAGGCCCTGCTGCAgaTGGTGCAGCAGTTCTCTGTGGATTTCGAGAAGCGCATCGAGGGCTCAGGGGACCAGGTGGACACGGTGGAGCTGTCCGGCGGCGCCAAGATCAACCGCATCTTCCACGAGCGATTCCCCTTCGAGCTGGTCAAGGGTGCAGCTCCTCCACCGTCCAGCCAAATTGTCATCCGGAAGGGCTGGCTGACCATCAACAACATCAGCATCATCAAGGGCGGCGCCAAGGAGTGCAGGAAGTTCTGCACAGCAAGTgtagacaggcagacacacgACAACTccctcagccaatcacagggcTGGATCCTCGCTGACGTTGTGGGGTGGGCGGGGCCATCCGGGGGGGAGGCGGGGCCTTGCCGTAGGGGCTTCAGCCTCAGGAAACGGCTAGAGTTACACCAAGAAGAGGGGGCTGAAGAGAACgacacagggagagaaagagagggaagacGGGAGGCgggaggAGGGGCCCACTTCCTGCCCAAGTTTCTAGttagagagcgagagagaggaaaaaaaaaaaaaaacgagatgAAATGA

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006811 ion transport biological_process
GO:0006812 cation transport biological_process
GO:0006813 potassium ion transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184873 lncRNA downstream 84008 21806980 ~ 21807306 (-) True G146951
TU184859 lncRNA downstream 145506 21745544 ~ 21745808 (-) False AMCG00005343
TU184798 lncRNA downstream 284779 21589996 ~ 21606535 (-) True G146891
TU184761 lncRNA downstream 329853 21560049 ~ 21561461 (-) True G146857
TU184738 lncRNA downstream 403603 21485949 ~ 21487711 (-) True AMCG00005333
TU185082 lncRNA upstream 71772 21982058 ~ 21982521 (-) False AMCG00005363
TU185126 lncRNA upstream 221980 22132266 ~ 22180932 (-) True G147122
TU185169 lncRNA upstream 318913 22229199 ~ 22229991 (-) True G147156
TU185197 lncRNA upstream 512703 22422989 ~ 22423230 (-) True G147184
TU185198 lncRNA upstream 515439 22425725 ~ 22426106 (-) True G147185
AMCG00005346 mRNA downstream 29883 21845044 ~ 21861431 (-) True AMCG00005346
AMCG00005347 mRNA downstream 49998 21838826 ~ 21841316 (-) True AMCG00005347
AMCG00005343 mRNA downstream 143516 21745574 ~ 21747798 (-) True AMCG00005343
AMCG00005342 mRNA downstream 147416 21740519 ~ 21743898 (-) True AMCG00005342
AMCG00005341 mRNA downstream 173853 21710505 ~ 21717461 (-) True AMCG00005341
AMCG00005354 mRNA upstream 1593 21911879 ~ 21916299 (-) True AMCG00005354
AMCG00005353 mRNA upstream 27162 21937448 ~ 21956941 (-) True AMCG00005353
AMCG00005352 mRNA upstream 49308 21959594 ~ 21960501 (-) True AMCG00005352
AMCG00005363 mRNA upstream 61137 21971423 ~ 21972456 (-) False AMCG00005363
AMCG00005361 mRNA upstream 72515 21982801 ~ 21995515 (-) True AMCG00005361
TU184860 other downstream 145861 21744876 ~ 21745453 (-) True G146938
TU184470 other downstream 1280671 20609354 ~ 20610643 (-) True G146618
TU184357 other downstream 1611568 20274391 ~ 20279746 (-) True G146532
TU184245 other downstream 1867807 20020710 ~ 20023507 (-) False AMCG00005256
TU185079 other upstream 60749 21971035 ~ 21982521 (-) True AMCG00005363
TU185101 other upstream 120539 22030825 ~ 22035272 (-) False AMCG00005362
TU185105 other upstream 126309 22036595 ~ 22101862 (-) True G147109
TU185104 other upstream 173431 22083717 ~ 22084944 (-) True G147108
TU185123 other upstream 217621 22127907 ~ 22130549 (-) True G147121

Expression Profile