RNA id: AMCG00005359


Basic Information

Item Value
RNA id AMCG00005359
length 1280
RNA type mRNA
GC content 0.60
exon number 3
gene id AMCG00005359
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 22086294 ~ 22087753 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCAGTACCAGGAGATGCTGTCTCTGGACGTGGGGGATGAGGCCCAGCTGCACGCTGCCTTCCTCGCCTACCTGGACCTCACTGACGTGCGGCAGTGGCAGCAGgtgtccagcagggggagctCTGAGCTGCAGCTGGTGCTACTGGAGGGCCGTGAGGGGGAAGGTCAGCCCACACAGATCATTGTACCACTTCCGGGTCACAGGTCAATCAGCCACAAATGgATGCGCTCACTGCTGGCCCCCCCACACCCCGGTGCGCCGCCCCCCCCCGCAGTTCTGCTGTGTGCCGTGGCCTCCGACTCCAGCCTGGTCTACCACCGCCTGACCCCCGGCCTGGTGACCCCCGAGCCCCCCGACGTCATCATGGACCGGGGGCACCGGCAGCACCGCAAGAGACGCCTGCACTGAGGTTACGGGGTCAGCGCCGACTGGGTAACCTGGGGTCACGGGGTCAAGACCGGCCAGTTCAGCGAGTCAACACAGACTGGGTTACTGGTGCAGGTCAGCCGAGGTCATGGGCTCAACTGAGGCCACTGGAGGTCAACGTTGAGTCGGAGTGGACAGGGTCCAGGGTGGGGACAGTCCTGGAGACTGAATTGTGATGCAACTCCAgtgttatgttatttttttttaaataattttatccACGGAGGGGTGAGGGGAGCAGCCGGACCCCACAGTGGACTGTCCAAGCCGGGGGTCTCTGTCCTGACCGAGCGGCTGCCCCCCCCCCTTACGACCAGCGCTGACTGTGGCAGTGAATACCGACATGCTTGAATACACAGAATAAAGTCCCAGTTTAAAGCACTCTCTCATCAGTACTAATGAATGGGGTGTAGTTCCCTCTGTCCTCACCAGGGGGCACCAGAGCACATCCCAACTCTTCGTCACCGTCACGTGCTGCTCTTCCTGCCCCGAGCGTGGGGGCCGTGAGCCGCTTCCTGTCCCACGCTGCCGGGGAGCGAGGAGGGGGTCAACCCTTCCCTGCGCAGACGCGGTCCACAGGGCACTGCGGTCACTCTGCCCCCGAGGGACTGATCTGGACACAGATCACTCCATCACAGGGAGACGCACACAGTGAGGAGGAGACGGACAGTGAGACAGTCAGGGCATCAGTGTGTCAGACAGTGTGACAGTGAGACAGTCAGTGCGTCTGACGCTGCGAGAGAGcaggtcagtgtcagtgtcactCGGGCCGTCAGTAACCAGGCCCAGAGTCTCGGGTACAAACAGctcctgtgtatttttttttattttttattttaatagaaaaaaaat

Function

GO:

id name namespace
GO:0090501 RNA phosphodiester bond hydrolysis biological_process
GO:0004519 endonuclease activity molecular_function

KEGG:

id description
K15324 TSEN15; tRNA-splicing endonuclease subunit Sen15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185082 lncRNA downstream 103773 21982058 ~ 21982521 (-) False AMCG00005363
TU184873 lncRNA downstream 278988 21806980 ~ 21807306 (-) True G146951
TU184859 lncRNA downstream 340486 21745544 ~ 21745808 (-) False AMCG00005343
TU184798 lncRNA downstream 479759 21589996 ~ 21606535 (-) True G146891
TU184761 lncRNA downstream 524833 21560049 ~ 21561461 (-) True G146857
TU185126 lncRNA upstream 44513 22132266 ~ 22180932 (-) True G147122
TU185169 lncRNA upstream 141446 22229199 ~ 22229991 (-) True G147156
TU185197 lncRNA upstream 335236 22422989 ~ 22423230 (-) True G147184
TU185198 lncRNA upstream 337972 22425725 ~ 22426106 (-) True G147185
AMCG00005360 mRNA downstream 7467 22061733 ~ 22078827 (-) True AMCG00005360
AMCG00005362 mRNA downstream 31327 22032936 ~ 22054967 (-) True AMCG00005362
AMCG00005361 mRNA downstream 90779 21982801 ~ 21995515 (-) True AMCG00005361
AMCG00005363 mRNA downstream 113838 21971423 ~ 21972456 (-) False AMCG00005363
AMCG00005352 mRNA downstream 125793 21959594 ~ 21960501 (-) True AMCG00005352
AMCG00005367 mRNA upstream 16389 22104142 ~ 22112254 (-) True AMCG00005367
AMCG00005369 mRNA upstream 58033 22145786 ~ 22146079 (-) True AMCG00005369
AMCG00005368 mRNA upstream 59294 22147047 ~ 22158405 (-) True AMCG00005368
AMCG00005382 mRNA upstream 128206 22215959 ~ 22223377 (-) True AMCG00005382
AMCG00005374 mRNA upstream 275841 22363594 ~ 22368062 (-) True AMCG00005374
TU185104 other downstream 1350 22083717 ~ 22084944 (-) True G147108
TU185101 other downstream 51022 22030825 ~ 22035272 (-) False AMCG00005362
TU185079 other downstream 103773 21971035 ~ 21982521 (-) True AMCG00005363
TU184860 other downstream 340841 21744876 ~ 21745453 (-) True G146938
TU184470 other downstream 1475651 20609354 ~ 20610643 (-) True G146618
TU185123 other upstream 40154 22127907 ~ 22130549 (-) True G147121
TU185128 other upstream 57948 22145701 ~ 22158415 (-) True G147124
TU185150 other upstream 107613 22195366 ~ 22198768 (-) True G147143

Expression Profile