RNA id: AMCG00005360


Basic Information

Item Value
RNA id AMCG00005360
length 2648
RNA type mRNA
GC content 0.60
exon number 9
gene id AMCG00005360
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 22061733 ~ 22078827 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gagggaggagtggagagagagggggggagaggccAGCCCTTCAACTCTGAGAGGAGAGCATTGGAAAGGCagcctccctcctccctccctcactctgcCGCTCCGCACTCCTCTGTCTCCTCAATCCCTCACTCTCAGCCAGGCTCGCACCCAGGGACCCGGGGAATCATGCCGACCGGCGGGGCTCTCTCTCTGGCGCTGGCGGCGGCGCTGCTCGGCTCCCTGCAGCCCCGGGCCGGTGCGGACCTGGTCACGCAGGTCCAGGAGGTTGTCCGGCCCGAGTCCGCGCTGATGCCGCCGAAAGTCATGATTGCAATCCTGGCCAGGAACGCGGCGCACAGCCTGCCTTACTACCTGGGCTGCATCGAGCGGCTGGAGTATCCCAAGGACCGCATCGCCATCTGCTCACGCTTCACCCACGTCATGAAGCTGCGCCAGGCAGCGCTGCGGGCAGCACGGGAGCGCTGGGCCGACTACATACTGTTCGTGGACAGTGACGTGCTGCTGACCAACCCACGGGTGCTGTCCCTCATGATAGCCGAGAACCTGACGCTGGCGGCGCCCATGATAGAGTCGCACACGCTCTACTCCAACTTCTGCGCGAGCCAAGCCCTGGCcttcaaccccccccacccccactacACCTGGGCCTATGATGACATCATGGTGTTCGCCTTCTCCGCCCGGCAAGCAGTCGACCACCCCCCCCTGGAGTCCTCACAGTACCTgcacaccccccccaccccccaggacAGGATGGGCTTTGACCAGatCTTCCTGATCAATCTGAGGCGCCGGTTGGACCGCAGGGACAGGATGCTGCGGACACTGTGGTGGAGCAGGGGCTGCGGCACGCACTGGTGCTGGAGGACGATctaTATAGGCCGTAAGCGGATGCAGGTGCAGCAGCCGGAGGTGTCCGTTCCGGGTGTCAGCAACCTGGTGGAGGCCGACTACTCGTACTGGACGCTGGGCTACGCGCTctccgAGTACATGCAGCAGTTCCCGGTGCGTGACCTGCGGGCATTCTCCGTGGAGCCCCTGCTGGTTTACCCCACGCACTACACGGGAGACACGGGCTACGTGAGCGACACTGAGACCTCCACCATCTGGGACGACGAGTCGCGGCTCACGGACTGGGACCGCACGCACGCCAGTAAGACCGGGCAGCAGGAGCGGATCAGCACCGCGGCGCAGAACAGCGTGACCGGCGCCCAGCCCCCGCCCGGCCCGGCCCCGGCGCCTGGCCACACCCCCTCCGCCACCACCACCCGAGATGAGTTCTGACACagtgacacgcacacacagtgacacgcacacattcacacacagttacacacacacacacacacacacacactgttacacactcCTATAGCGTGGCAGCAGGGCTGAACTGTGTCTGTGATCGCCGCGGCAGGAAGTGAACAcagtgacccctgacccctccAGACACAGACCCGACCCCTGACCCCtctggacacacacactcctttatttattctgcTGTATCCCTcattctctgtgtctgtgctggagGGGCGCTGGCTACTTGACCACCTGGACTGGGGGCTGGGAGAGACTGGGGAAGGGATTAATTTGAGATACTCTtgctcataataataatgttgacaGACGGGTGTGGTGTGTGGGCCTGGGGGGGCACAGGCAGGTCCTGTGTGCAGGTCACTGAGGTCACGCACTGAGGTGTGTCGGGGGCATTGAGGGTGAGTGGGGGATGAGGGGTGGGCAGCGCTCTCTCTGACACTGGCTGACTGACCGCCCCATCACTCTCACCTGCCAGCCTGCACACCTGTCTGTCCATCtttcctgtctgcctgtccctctgtcctctcCGCACGTCCTGTGACTGGATCACACTCTTGCATTCTCTACCCCCCTCCTGCGGGGACTTCTGATGGGCCCGAGACTCAGCGACATCTGAACCGGCTCCTCCACTGGACAAAACGTTTCTGTGACCGTGTCAGTAAAACCGTTGCATCCATTccggtctgtgtgtctgtatctgtgtgtctgcatgaaCGTCTGCGTGTCTGcatgtgtgcctgtgtttgtatgtgtgcctgtgtgtgtctgaatgtgtgTCCGTGTGTTGGCATGTGTGTATTTGGGGATCTGTGAAtctgagagggagagtgagagagacaggctGCAATGCCTTCTGCAGGCCACTCCCTGCACTGCACCCCTCTGCCAGACCCTgagcgtgtgtgtttgtgtgtcagtgtgtctcacggcctgtttctgtgtgtttgtcagtgtgtgtgtgttggattaTCAGTGACTACCTTACGACACCCTCCCACGGCTCAGCCAGTCCCCACAGTACCGACAGCACGCTGCTACACGTACAGCACGGGGCCCCTGGGTGTCACTGCTGCTCCGTGTCCTGCATAGCCACTGTGGCCCCTGCCCCCAACAGGGCTGTGTCACTCTGGGAAGAGTCTGAGAGCCTGTTTATGTCAGTGAATGTCTTCTGAGTTTCCTTGAAAGCACACAGAACTGATACGTGATACAGTGCGatgcaatgtttttgaaaatcctttttaaagaaagttttattttgtatttttgtgtaaaagtcaatgcaatgtgtttgtttaatgaagAGAAAATGATAGTTGGTA

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0007275 multicellular organism development biological_process
GO:0048856 anatomical structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185082 lncRNA downstream 79212 21982058 ~ 21982521 (-) False AMCG00005363
TU184873 lncRNA downstream 254427 21806980 ~ 21807306 (-) True G146951
TU184859 lncRNA downstream 315925 21745544 ~ 21745808 (-) False AMCG00005343
TU184798 lncRNA downstream 455198 21589996 ~ 21606535 (-) True G146891
TU184761 lncRNA downstream 500272 21560049 ~ 21561461 (-) True G146857
TU185126 lncRNA upstream 53439 22132266 ~ 22180932 (-) True G147122
TU185169 lncRNA upstream 150372 22229199 ~ 22229991 (-) True G147156
TU185197 lncRNA upstream 344162 22422989 ~ 22423230 (-) True G147184
TU185198 lncRNA upstream 346898 22425725 ~ 22426106 (-) True G147185
AMCG00005362 mRNA downstream 6766 22032936 ~ 22054967 (-) True AMCG00005362
AMCG00005361 mRNA downstream 66218 21982801 ~ 21995515 (-) True AMCG00005361
AMCG00005363 mRNA downstream 89277 21971423 ~ 21972456 (-) False AMCG00005363
AMCG00005352 mRNA downstream 101232 21959594 ~ 21960501 (-) True AMCG00005352
AMCG00005353 mRNA downstream 104792 21937448 ~ 21956941 (-) True AMCG00005353
AMCG00005359 mRNA upstream 7467 22086294 ~ 22087753 (-) True AMCG00005359
AMCG00005367 mRNA upstream 25315 22104142 ~ 22112254 (-) True AMCG00005367
AMCG00005369 mRNA upstream 66959 22145786 ~ 22146079 (-) True AMCG00005369
AMCG00005368 mRNA upstream 68220 22147047 ~ 22158405 (-) True AMCG00005368
AMCG00005382 mRNA upstream 137132 22215959 ~ 22223377 (-) True AMCG00005382
TU185101 other downstream 26461 22030825 ~ 22035272 (-) False AMCG00005362
TU185079 other downstream 79212 21971035 ~ 21982521 (-) True AMCG00005363
TU184860 other downstream 316280 21744876 ~ 21745453 (-) True G146938
TU184470 other downstream 1451090 20609354 ~ 20610643 (-) True G146618
TU184357 other downstream 1781987 20274391 ~ 20279746 (-) True G146532
TU185104 other upstream 4890 22083717 ~ 22084944 (-) True G147108
TU185123 other upstream 49080 22127907 ~ 22130549 (-) True G147121
TU185128 other upstream 66874 22145701 ~ 22158415 (-) True G147124
TU185150 other upstream 116539 22195366 ~ 22198768 (-) True G147143

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU459788 True 1348 lncRNA 0.46 2 CI01000258 119312 ~ 122131 (+)