RNA id: AMCG00005361


Basic Information

Item Value
RNA id AMCG00005361
length 4289
RNA type mRNA
GC content 0.60
exon number 19
gene id AMCG00005361
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 21982801 ~ 21995515 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGccgagagagggaggaggcgaggagaggggaggggagcgGATGGGCGGCATGTTATTGAGGTTTAAAACCCTGCAGCTGACCTTCAGCATGGTGCGCCGCGTGGCCGTGATCGGAGCGGGCCCCTCGGGGCTGGTGTCCTTGAAGACCTGCCTGGACGAGGGACTGGAGCCGGAGGTGTCCGAGCAGGACCGGGCCAGTATTTACCGCTCTCTCACCGTCAACATCTCCAAGGAGATGATGTGCTATAGTGACTTCCCCATCCCTGCAGAATTCCCCAACTACATGCACCACTCGCGCATCCTGGAGTACCTGCGCATGTACGCCCAGCActtcaagctgctcccacacaTCCGCTTCCAGacctCTGTGCGCAGTGTGAGGGAGCGGCGGGATTTCTCTCGCACAGGACAGTGGGATGTTGTGACGGTGGACAAAAATGGACAGCAGGAGACCCACTTGTTTGATGCTGTGATGGTCTGTACGGGACACTACACCTATCCTAACCTGCCACTCAAGGAATTCCCAGGGATTGAAACATTCGAAGGGAAGTATTTCCACAGCTGGGAGTACAAGGAACCCGATGAGCTGAAAGGGAAGCGGATTGTGGTGATTGGCATTGGGAACTCCGGAGGGGACATCGCTGTGGAGTCCAGCAGAGTCGCTGAGCAGGTGTACATGAGCACTCGCCGGGGGGCCTGGGTCATCCGCGTCGTCTCCGATAAAGGCATTCCGGTGGACGTGCAGTACAACACGCGCTTCGTGCACATCCTCTTCCAGATCCTGCCCATCAGTGTCCTCAACTGGATCGGAGAGAGAATCCTGAACAAGCAGTACGACCACCACATGTACGCCCTGAAGCCCCAGCACAGGCTGTTCAGCCAGATCCCCGTGATCAACGATGACCTGCCCTTCCGCATCCTGTCGGGCTCGGTGGTGGTGAAGCCCAATGTGCGTGAGATCAGGGGCTCCAGCGTGGTGTTCGAGGACGGGACGGTTGTGGACAAGATCGATGTGGTGGTCTTCGCCACGGGATACAACTATGACTACCCCTTCCTGCCGCCCTCCATCCTCGGCAAGACTGGCCACAGGTTGGGCCTGTACAAGCACGTTTTCCCACCCAACCTGGAGCACCCCACGCTGGCGGTGGTGGGGTTCATCCACGGGCTGGGTGCCATCATGTGCATGGCGGAGATGCAGGCGCGCTGGGCCACCCGGGTCTTCACAGGACGGAAGAAGCTGCCGTCCAAGCAGGCGATGCTGAGGTCCATTGAGAATGACACCAAGCAGATGGAGAAGAGcTACATCTGCTCCAAGCTGGTCCCGCTGCAGGTGGACTTTGCCAGCTACCTGGACGACCTGGCGGGTGAGATCGGGGTGCGGCCGAACCTCTTCTGGCTGTTCTTCACAGACTACCCGCTGTGGAAGAAGGTCCTGATGGGCCCGCTCACCACCTACCAGTACCGGCTCCGGGGCCCGGGGCGCTGGCCCGACGCCCGGCATGCCATCTTCACGCAGATGGACCGCGTGACCCAGGCGCTGAAGACGCGGCCCATGCCCAAAAAGCCCGGGCCCTCGGTGGCACTGCGGTTGCTGAAGGCCTGCGTCGTGATCGCAATAGGCGCCGCCGTCGCCTACTACCTCCACTGGCACCCACCCGCCTTCCTGCAGGCTCGGCTCAGTGCCTTCATCGGCAAGGAACTCCTGAGGGAGCGTTCAGCTACACTGACAAACCGAGATTACAGCGAGGAATTCACCATGGTGCGCCGTGTGGCTGTGGTCGGAGCGGGCCTCTCGGGCCTGGCCTGTGTAAAGTGCTGCCTGGACGAGGGGCTGGAGCCGCTGTGCTTCGAGAGCAGCGAGGACATCGGGGGGCTCTGGAGGTTCAAGGAGAATCCCGAGCCGGGCAGAGCCAATATGTACCGCTCCCTCATCACTAACACCTCCAAGGAGATGATGTGCTTCAGCGACTTCCCGATCCCGGCGCACTTCCCCAACTACATGCACCACTCGCTCATCATGGACTACTTCCGCATGTACGCCGAGCACTTCCAGCTGCTCCCGCACATCCGCTTCCAGacctGTGTGCGCAGTGTGGAGCAGCGCCCTGACTTCTCTCGCTCGGGGCAGTGGGAGGTGGTCACAGTGGATAGGGAGGGACGGGAGGAGACACACATCTTTGATGCGGTGATGGTCTGCACGGGTCTCAACACGGAGCCAGTCCTGCCCCTCAATGAGTTCCCAGGGATCGAGTCTTTCGGAGGACGGTTCTTCCACAGTGTGGAGTACAAGGATCCGGAGGAGTTCAGAGGGAAAAGGATCCTGGTGATCGGGATCGGGAACTCTGGGGGGGACATCGCGGTGGAACTGAGCCGAGTCGCTGAGCAGaCTTTCCTGAGCACCCGTCACGGCGCCTGGATCGTCAGCCGTCTGTCCAGCAGAGGACTCCCTCTGGACCTGAAGGTCAACACGCGATACATGAGCCTGCTGACCCAATGGCTGCCCATGGCGCTGCTCAACTGGGCTGTTCAGCCGCACGCCGATGCTGAACGACGACCTGCCCGGACGCATCCTCTCGGGTGCCGTGGTGGTGAGGCCCGACGTGCGAGCTCTGGCGTGGAGTTCGAGGACGGGACGGGGGAGGACCAGATCGATGTGGTGGTCTTCGCCACAGGATACAACTACGGCTTTCCCTTCCTGCCGACCTCCGTCTCCCCCCAGCCCAGACAGCACCTGCGCCTGTACAAGAATGTCTTCCCCGCCGATCTGGAGCAGCCCACGCTGGCCATGGTGGGCTTGGTCAAGGCTGCCGGGCCCGTCATGCCCATAGTGGAAATGCAGGGGCGCTGGGCCACCCGAGTCATGAAAGGGCTGAACAAATTGCCAACCACGGCAGCCATGGTGATGGAGATTGAGTGTCAGAGGAAGAGGATGGAGAGAAGGTTCACTCCAGAGCACCATGCCCTCCAGGTGGACTACATGCCCTACATGGACGAGCTGGCGGAGCAGTTTGGGGTGCGCCCCAGTGTGCTGGCGCTGCTGCTGCGGGACCCTCGTCTGGGGCTGAGTGTGATGCTGGGCCCCTGCACCCCGTACCAGTACCGGCTCCGCGGGCCGGGGAAGTGGGCCGGCGCTCGCCACGCCATCCTCACACAGTGGGAGCGAGTGGCCCAGCCAATGAGGACGCGGCCGGTCCCGGACCTGCCACGCCCCTCCGGCCTGCCCCTGCTGCTCCATGTGTCGGTGGCCGGCCTGCTGCTCTGTGCCGCTGTGCTCTACACTCGCCAGCACCCCCCCGCCTTCCTGCAGGACCCCCCCGCCTGCCTACAGCAGCCCCTCACGTTTCTGCAGAGCCTGTGGCTGCGTTTCGCTCCACAGTGACCAGCGCTGACTGCCAGTGGAAGCACCTCTCACCCCTGACCACCATCACAACATCCACAATCCGGCTTCCTGCTCTGATTGCCTGCCCTGCCAAGGACCCTGACCCTAGGGCTGAACTGTCTGCCGCTCTCGGGATCGTCTGGGgtttataaatcacacatgagaatccagccaatcacagagcaccATTTCCAGCCATTCCTGTGCCTCGTATCTTGTGTATAATTGTCATCCCGTGTCACACAGTTTGTCAAGAAGCAAAGCAGAGcttataacaaataaaacaacacagcaacaatCAACAACAAGCGCCAACCCACCGGCCCCTGAGCATGGGGGTGAGGTCAGTGTCTCTGCTTGTTTCAGGCCTGTGCAAGTCCTGTGAAAATATCCAGTGTGTCCCTCTCTTACACTTACTGACACAGCAACACATGAGCTGTAACATCAAAGCTGTTCACTCCACTGTAGACCCACTGGCATCTCTGCGCCGTGTCCGTCCCAGCGCCCACCTCTCAGCCCAATGTCACTCTTAGCGCCTCCTCTCTTTGCCATGTCCGTTCCAGCGCCCCCTCTCAGTTCCGTGTCTGTCCCAGTGTCGCCTCTCAGCACCGTGTCCATCACCAAATGCCCCGTCTCTGTTCTGTACCCATCCCAGCACCCCTTCTCAGTCCGGATCTGTCCCAGCACCCCCCTCTGTGCTGTGTCAGTCTCAGAGACCACGTCAATGACTTTAGACTCATAAGGCATTAGGTTTAAATCCATTCAGCTTGAAgcagttaaaataatgtgttcacTGTGTTCTACTGGATCAGCACATACATGACAATAAACTCACTGCCAGCCCGCAGAGGCACTCTGAGTCTCTTCTGTGTGTCCAGAGTCTGGAAGCCCTGGTCAGCCACTCAGAC

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0004499 N,N-dimethylaniline monooxygenase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0050661 NADP binding molecular_function

KEGG:

id description
K00485 FMO; dimethylaniline monooxygenase (N-oxide forming)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185082 lncRNA downstream 280 21982058 ~ 21982521 (-) False AMCG00005363
TU184873 lncRNA downstream 175495 21806980 ~ 21807306 (-) True G146951
TU184859 lncRNA downstream 236993 21745544 ~ 21745808 (-) False AMCG00005343
TU184798 lncRNA downstream 376266 21589996 ~ 21606535 (-) True G146891
TU184761 lncRNA downstream 421340 21560049 ~ 21561461 (-) True G146857
TU185126 lncRNA upstream 136751 22132266 ~ 22180932 (-) True G147122
TU185169 lncRNA upstream 233684 22229199 ~ 22229991 (-) True G147156
TU185197 lncRNA upstream 427474 22422989 ~ 22423230 (-) True G147184
TU185198 lncRNA upstream 430210 22425725 ~ 22426106 (-) True G147185
AMCG00005363 mRNA downstream 10345 21971423 ~ 21972456 (-) False AMCG00005363
AMCG00005352 mRNA downstream 22300 21959594 ~ 21960501 (-) True AMCG00005352
AMCG00005353 mRNA downstream 25860 21937448 ~ 21956941 (-) True AMCG00005353
AMCG00005354 mRNA downstream 66502 21911879 ~ 21916299 (-) True AMCG00005354
AMCG00005355 mRNA downstream 72515 21891314 ~ 21910286 (-) True AMCG00005355
AMCG00005362 mRNA upstream 37421 22032936 ~ 22054967 (-) True AMCG00005362
AMCG00005360 mRNA upstream 66218 22061733 ~ 22078827 (-) True AMCG00005360
AMCG00005359 mRNA upstream 90779 22086294 ~ 22087753 (-) True AMCG00005359
AMCG00005367 mRNA upstream 108627 22104142 ~ 22112254 (-) True AMCG00005367
AMCG00005369 mRNA upstream 150271 22145786 ~ 22146079 (-) True AMCG00005369
TU185079 other downstream 280 21971035 ~ 21982521 (-) True AMCG00005363
TU184860 other downstream 237348 21744876 ~ 21745453 (-) True G146938
TU184470 other downstream 1372158 20609354 ~ 20610643 (-) True G146618
TU184357 other downstream 1703055 20274391 ~ 20279746 (-) True G146532
TU184245 other downstream 1959294 20020710 ~ 20023507 (-) False AMCG00005256
TU185101 other upstream 35310 22030825 ~ 22035272 (-) False AMCG00005362
TU185105 other upstream 41080 22036595 ~ 22101862 (-) True G147109
TU185104 other upstream 88202 22083717 ~ 22084944 (-) True G147108
TU185123 other upstream 132392 22127907 ~ 22130549 (-) True G147121
TU185128 other upstream 150186 22145701 ~ 22158415 (-) True G147124

Expression Profile