RNA id: AMCG00005362


Basic Information

Item Value
RNA id AMCG00005362
length 3183
RNA type mRNA
GC content 0.64
exon number 21
gene id AMCG00005362
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 22030825 ~ 22054967 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTCCGGAGAGCACAGAGCTGAGCTCGGGGACAGACTGTGGGGAGAACACTGAGGCACTGGGACCAGTACACAGACCAGACAGAGACTGGGAGAGACACTGCACAGGACAGACAGGGACACGAGGACACATTGCACGCAGCACTGGGAATACTGGGACACAGACTGGGAGCACAGCCCGGGGGGACCGGCACACGGTTGGGCCCTCCTGGACTGTAAGCAGCGCGCAGGGAGAGGAAACGGAGACGCCACGGACTGAGCACTGGGATCACAGACGCAGGGAAAACACTGGGAACAGTGGGGGACCCGGACACAGCGGCTGGACAGAGGGACCGCAGGCACTGAGGGGTCGGGCAAGCCGTGCCCCCGGACCCTCCGCCGCCATGATCTCGCACTACCCCCTGGCCTCCCTGCTGCCCTGGCCCCCTAGCGCCCCCCACTCCCCCGGCCTGGGCCTGGAGTTGCTGGGCGGGGGCAGCGGCGGCGTGTTGCTGCAGAGGTACCAGCCCCGATCCCCGGACAGCGTCCCCCGGCACTGGAGAGAGGCGGAGCCACGGCCATTGAGTAACGGAGcgcagagagaaagaaaaagtgtcaaagacagaaaagagacagagacCGAGGCAgaggggaaggaggagagaTCTGTGACGgggtgtgtgtgcagtacagaGAGGGAGGGCTCAGCGGCTCTAGCAGTCCAGCCAGCGCTGCTCCCACACCGGATTACAAACGGAGTCGACTCGGGACGGGAGTTCTGCCGGAGCCGCAGGGGAGAGACAGGGACCCGGGTCCGATGCGCCGAGCGTGTCATGCGGGAGGCGCTCGCCATGCGGTTCGCCTGGAGAGCTAAGAtgGCCGAGGGAGACCGGCTGCCCCCCGGCCACACGGTCAGCCAGCTGGAGACGTGCAAGGTGCGCAGTATCCGGGCGGGCACCCTGGAGCGGCTAGTGGAGACGCTGCTGACCGCGGTGGGGGACAATGACCTCACCTACGCCAGCATCTTCCTGTCCACCTACAGGGCCTTCAGCTCCACCGGCACCGTGCTGCGGCTGCTACTCAACAGgtttgGCAACGAGGCGGAGGACATGGGGCCCCCCAGCCCCACTGACAGCAGAGGAGCTGTGCGCAACGCCCTGGCCTCCACCCTGCGCGCCTGGCTGGACCAGTGTCCCGAGGACTTCCAGGAGCCGCCCGACTACCCCAGCCTGCGCAGCGTGCTCGGCTACCTGCAGAGGGCGCTGCCGGGGTCGGAGACAGAGCGCCGGGCACAGAGCCTGCTGGAGCAGCTGCAGAGACAAGCCGACACGGAAGCCgaggGCACTTTCCACCGCAATGGCAGCTTCTGTctgggggaggaagaggaagtggaGATCGAGGGTTCCGAGGACTTCCTGTCCTTCAAGGCTGACCTGGTGGCCGAGCAGCTGACCTTCATGGACGCTTTCAACGCCGTGGCGGGCTGCGTGGTGGGCACCGTGCTGCGGCCCCGGCAGCTGCGCCCGTCCGCCCGCGCCCGCCTGCTGGAGCGCTGGATCGACATCGCGCAGggacaGCATGGCCATCACAACAACTACCTGACCAGCCGGGAGCTTCTGATGAAGgAGGGGACCTCGAAGTTTGCCAGTGTGGAGAGCTGTGTGAAGGAGCACCAGAAACGCACCCACAAGAGACTGCAGCTGCAGAAGGacatgGGTGCCATGCAGGGCACAGTGCCGTACCTGGGCACCTTCCTGACTGACCTCACCATGCTGGACACTGCGCTACCGGACTATGTGGAGGGAGGTCTGATCAACTTTGAGAAGAGACGCAGGgagTTTGAGGTGATCGCACAGATCAAACTGCTCCAGTCGGCCTGCAACAGCTACTgcttgacctctgaccctgccTTCCTGCGCTGGTTCCGCAACCAACCGCAGCACAGCGAGGAGGAGAGTCACACGCTGTCGTGTGAGATCGAGGCTGTGGCGGACGGCAGCTCCACCTCCCCCAAACACCGCAAGAGCATGGTACAGaccctgagagagaggcagagagacggAGCCCTGCTGGACCGCTATGTGTCCGTGTTAACCCCACCCTCTCTGCCCCCCCAGCTCTCCCTGTCGTCCTCCTGCTCGTCTCTGCACTCCATGGACACGTCCTCGTCCTCGGCCAGCAACTGTCCGCTGCCGCCCCCCCCCTCGACCTCGCTGCCCTCCCCTCCGCCCATGCCCCCCCCCCGCGGGCACCGCCGCTGCTGCTCTATTCAGGATAAGACCCCCGCAGTGATCGTGCGTGCCATGACCAAACACAACCTGGACGGGGAAGCGGCGGACAGCTACGAGCTGGTGCAGGTCATCTCAGAGGACCGAGagcttGTGATCCCGGACAATGCGAACGTGTTCTACGCCATGAACAGCTCGGCCAACTTCGACTTCGTGCTGCGTCTGCGTGGGTCTGCGGGCCGGCCGGTCCAGCTGCGCAGCCGATGCAGCTCCACCCTGCCCCGTGGCCCCCGGCACAGCGGCCCGAgtctgcCTGTGCCGAGAGAGGAGgatgagaagagagagagagagagagtggagtcCTCACTTGTTACCTCAGCACTTCCAACCCGAGCACAAGACCCCCTCCAGCTCCTCACTCGGCCAGCACCCCCCCAGCTGGGATGTTTTGCACCTCctgcccccccagcccctctGCCAGTACCTCCTGTTTCCTTCACTTCaatgaagaagaaggaggaggaggaagaggagaagaagagaCGACTGCCAGACTCCGGAGGGCCGCGTGACGGACCCTCAAATCAAGAGTCTGCTGCacactgggagagagggaggagcgagagaaggagggagggaagggaggaGGCACTAATAGGGAAgcgagagaaggagagaagtggttgtgagggagggagagaaggagtaAAGGGAAAGGTAGGAAGGgaaggaggaggcagcaagagggaggaggagggtggaaagaaagaaagagagagggagagggccgGGCTTCCGGGGGGCGTTCTGCGCACACTGGTTCTGTGTCACGGGGACAGACGGGCTCGTGACGGAGTCCTGGACGAGTGTGTTGTTTGGGGTCATCTCAAATTGCTGCCCAGTGAGGAGACAACCGAGCAGGGAGTCCGTCCTGAGCACAGGGAGACTGTTGAAGCTGCGGCCCCCGACCCTCCACAG

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185082 lncRNA downstream 50415 21982058 ~ 21982521 (-) False AMCG00005363
TU184873 lncRNA downstream 225630 21806980 ~ 21807306 (-) True G146951
TU184859 lncRNA downstream 287128 21745544 ~ 21745808 (-) False AMCG00005343
TU184798 lncRNA downstream 426401 21589996 ~ 21606535 (-) True G146891
TU184761 lncRNA downstream 471475 21560049 ~ 21561461 (-) True G146857
TU185126 lncRNA upstream 77299 22132266 ~ 22180932 (-) True G147122
TU185169 lncRNA upstream 174232 22229199 ~ 22229991 (-) True G147156
TU185197 lncRNA upstream 368022 22422989 ~ 22423230 (-) True G147184
TU185198 lncRNA upstream 370758 22425725 ~ 22426106 (-) True G147185
AMCG00005361 mRNA downstream 37421 21982801 ~ 21995515 (-) True AMCG00005361
AMCG00005363 mRNA downstream 60480 21971423 ~ 21972456 (-) False AMCG00005363
AMCG00005352 mRNA downstream 72435 21959594 ~ 21960501 (-) True AMCG00005352
AMCG00005353 mRNA downstream 75995 21937448 ~ 21956941 (-) True AMCG00005353
AMCG00005354 mRNA downstream 116637 21911879 ~ 21916299 (-) True AMCG00005354
AMCG00005360 mRNA upstream 6766 22061733 ~ 22078827 (-) True AMCG00005360
AMCG00005359 mRNA upstream 31327 22086294 ~ 22087753 (-) True AMCG00005359
AMCG00005367 mRNA upstream 49175 22104142 ~ 22112254 (-) True AMCG00005367
AMCG00005369 mRNA upstream 90819 22145786 ~ 22146079 (-) True AMCG00005369
AMCG00005368 mRNA upstream 92080 22147047 ~ 22158405 (-) True AMCG00005368
TU185079 other downstream 50415 21971035 ~ 21982521 (-) True AMCG00005363
TU184860 other downstream 287483 21744876 ~ 21745453 (-) True G146938
TU184470 other downstream 1422293 20609354 ~ 20610643 (-) True G146618
TU184357 other downstream 1753190 20274391 ~ 20279746 (-) True G146532
TU184246 other downstream 2009429 20020710 ~ 20023507 (-) False AMCG00005256
TU185104 other upstream 28750 22083717 ~ 22084944 (-) True G147108
TU185123 other upstream 72940 22127907 ~ 22130549 (-) True G147121
TU185128 other upstream 90734 22145701 ~ 22158415 (-) True G147124
TU185150 other upstream 140399 22195366 ~ 22198768 (-) True G147143

Expression Profile