RNA id: TU185101


Basic Information

Item Value
RNA id TU185101
length 1545
RNA type TUCP
GC content 0.58
exon number 5
gene id AMCG00005362
representative False

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 22030825 ~ 22054967 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCGCCCGGGCTGCTCCCCCCCGCCTACAACATCCAGAGCCAGGACTCGTGTATCGTGCGGACCAGCCTGGAGCAGGGCAACGGCAACCTGTACCGGAGCATAGtgCTGACCAGTCAGGATAAGACCCCCGCAGTGATCGTGCGTGCCATGACCAAACACAACCTGGACGGGGAAGCGGCGGACAGCTACGAGCTGGTGCAGGTCATCTCAGAGGACCGAGagcttGTGATCCCGGACAATGCGAACGTGTTCTACGCCATGAACAGCTCGGCCAACTTCGACTTCGTGCTGCGTCTGCGTGGGTCTGCGGGCCGGCCGGTCCAGCTGCGCAGCCGATGCAGCTCCACCCTGCCCCGTGGCCCCCGGCACAGCGGCCCGAGTCCCCGCGGCAAAGTCATCCtgtgaggtctgcCTGTGCCGAGAGAGGAGgatgagaagagagagagagagagagtggagtcCTCACTTGTTACCTCAGCACTTCCAACCCGAGCACAAGACCCCCTCCAGCTCCTCACTCGGCCAGCACCCCCCCAGCTGGGATGTTTTGCACCTCctgcccccccagcccctctGCCAGTACCTCCTGTTTCCTTCACTTCaatgaagaagaaggaggaggaggaagaggagaagaagagaCGACTGCCAGACTCCGGAGGGCCGCGTGACGGACCCTCGTGCGTTCTGATTGGCTCCTGGGGGGTAGAAGTCACGGGTTCATGAACTCTCCCCATTTCCTGTTGACATGTGAGCACTTCCTGGGTGAAAGGACGCTGAATGGCTGTGTGATGTGATGTCCCGCCCCGGAGACCTGCTGATGTCCAGTAGGGTTGCACTTCAGTAtgttgtgtgtgcgtttgtttatttgtgttctgGGTCCGGATTGGGGGTCTCGACACCCCTCTTCCCCTGAGATGTTTGTCCTCGTTCGCTTTGCCCGTCGacatcacaaacaaaacatgatttatgtCCAGAAAAGATAGTGGTTTGAAAAAGAAATCAAGAGTCTGCTGCacactgggagagagggaggagcgagagaaggagggagggaagggaggaGGCACTAATAGGGAAgcgagagaaggagagaagtggttgtgagggagggagagaaggaGGAGGCACAGCCGACAGCTGCTcagaacaacagaaaaagggaaaggaaGGGAGTGTGGGTaacagagagaaggaggagggggtCTGCAGCAGTGcgtctccgtctctgtctcagtgtctgtctgtggggCGCTGCTCTCTGCTGCCCCTCAGGGCTGGGGCGTGTAGCGCAGGTACTTCTTCCCCGACGGCAGGTCCTTCACAAAGACCCCTGAGGGGAACATTTCTGCCGCCTCCTCCTCCGCGACGTTGGGCAGCACCATCACTCGATCGCCGGGCTGAGGGGTTCACCATTCATTCCAGTTAGCACCGGTTTAATTTCCCTCGTTTCTATTGTCTAactcaggggttttcaaaccggtcctgcagaaccctctgccctgctgggttttgtttcaacagaggtcttaattgcttaattga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185082 lncRNA downstream 48304 21982058 ~ 21982521 (-) False AMCG00005363
TU184873 lncRNA downstream 223519 21806980 ~ 21807306 (-) True G146951
TU184859 lncRNA downstream 285017 21745544 ~ 21745808 (-) False AMCG00005343
TU184798 lncRNA downstream 424290 21589996 ~ 21606535 (-) True G146891
TU184761 lncRNA downstream 469364 21560049 ~ 21561461 (-) True G146857
TU185126 lncRNA upstream 96994 22132266 ~ 22180932 (-) True G147122
TU185169 lncRNA upstream 193927 22229199 ~ 22229991 (-) True G147156
TU185197 lncRNA upstream 387717 22422989 ~ 22423230 (-) True G147184
TU185198 lncRNA upstream 390453 22425725 ~ 22426106 (-) True G147185
AMCG00005361 mRNA downstream 35310 21982801 ~ 21995515 (-) True AMCG00005361
AMCG00005363 mRNA downstream 58369 21971423 ~ 21972456 (-) False AMCG00005363
AMCG00005352 mRNA downstream 70324 21959594 ~ 21960501 (-) True AMCG00005352
AMCG00005353 mRNA downstream 73884 21937448 ~ 21956941 (-) True AMCG00005353
AMCG00005354 mRNA downstream 114526 21911879 ~ 21916299 (-) True AMCG00005354
AMCG00005360 mRNA upstream 26461 22061733 ~ 22078827 (-) True AMCG00005360
AMCG00005359 mRNA upstream 51022 22086294 ~ 22087753 (-) True AMCG00005359
AMCG00005367 mRNA upstream 68870 22104142 ~ 22112254 (-) True AMCG00005367
AMCG00005369 mRNA upstream 110514 22145786 ~ 22146079 (-) True AMCG00005369
AMCG00005368 mRNA upstream 111775 22147047 ~ 22158405 (-) True AMCG00005368
TU185079 other downstream 48304 21971035 ~ 21982521 (-) True AMCG00005363
TU184860 other downstream 285372 21744876 ~ 21745453 (-) True G146938
TU184470 other downstream 1420182 20609354 ~ 20610643 (-) True G146618
TU184357 other downstream 1751079 20274391 ~ 20279746 (-) True G146532
TU184245 other downstream 2007318 20020710 ~ 20023507 (-) False AMCG00005256
TU185105 other upstream 1323 22036595 ~ 22101862 (-) True G147109
TU185104 other upstream 48445 22083717 ~ 22084944 (-) True G147108
TU185123 other upstream 92635 22127907 ~ 22130549 (-) True G147121
TU185128 other upstream 110429 22145701 ~ 22158415 (-) True G147124
TU185150 other upstream 160094 22195366 ~ 22198768 (-) True G147143

Expression Profile