RNA id: TU185079


Basic Information

Item Value
RNA id TU185079
length 755
RNA type TUCP
GC content 0.58
exon number 4
gene id AMCG00005363
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 21971035 ~ 21982521 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTACAAAGCCTACTTTGGACAGGTTGCAAAAAGTCACCAAACTGAGCTGTGCTCTCCTGTGTTGAAGTTCATCAGGTTTGAATCTCTCTCCATTTGGTAAAAAGCCAAAGTAAAGTCAGCTGTGGACAAAGTCTACCTGCGGCCATTGCAGTGGCCGGTGGGAGGATATGTAATGAAGCCAGACAGAGCAGGAACCCCTCACACAATATCTGTCCTGCCTCGCTGCGGAGATTGTTCTCGGACAAAAGCACAGTCACCATGGCTCGGCGCATTGCGATCATCGGCGGGGGCAGCTCGGGGCTGGCCTGTGTAAAGTGCTGCCTGGACGAGGGGCTGGAGCCGGTGTGCTTCGAGAGCAGCGAGGACATCGGGGGGCTCTGGAGGTTCAAGGAGACCCCCGAGTCGGACCGGGCCAGTATCTATCACTCTGTCATCATCAACACCTCCAAGGAGATGATGTGCTTCAGCGACTTCCCGATCCCGGCTCACTTCCCCAACTACATGCACCACTCGCTTATCATGGACTACTTCCGCATGTACGCCGAGCACTTCCAGCTGCTCCCGCACATCCGCTTCCAGacCCGTGTGCGCAGTGTGGAGCAGCGCCCTGACTTCTCTCAGTCGGGGCAGTGGCAGGTGgtcacagtggacagagagggGCGGGAGGAGAGCTCTGTGTTCGATGGCGTGCTGGTCTGCACGGGGCACCACGTCCACCCACACCTGCCCCTCCAAGACTTCCCAGGTGAGCTggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184873 lncRNA downstream 163729 21806980 ~ 21807306 (-) True G146951
TU184859 lncRNA downstream 225227 21745544 ~ 21745808 (-) False AMCG00005343
TU184798 lncRNA downstream 364500 21589996 ~ 21606535 (-) True G146891
TU184761 lncRNA downstream 409574 21560049 ~ 21561461 (-) True G146857
TU184738 lncRNA downstream 483324 21485949 ~ 21487711 (-) True AMCG00005333
TU185126 lncRNA upstream 149745 22132266 ~ 22180932 (-) True G147122
TU185169 lncRNA upstream 246678 22229199 ~ 22229991 (-) True G147156
TU185197 lncRNA upstream 440468 22422989 ~ 22423230 (-) True G147184
TU185198 lncRNA upstream 443204 22425725 ~ 22426106 (-) True G147185
AMCG00005352 mRNA downstream 10534 21959594 ~ 21960501 (-) True AMCG00005352
AMCG00005353 mRNA downstream 14094 21937448 ~ 21956941 (-) True AMCG00005353
AMCG00005354 mRNA downstream 54736 21911879 ~ 21916299 (-) True AMCG00005354
AMCG00005355 mRNA downstream 60749 21891314 ~ 21910286 (-) True AMCG00005355
AMCG00005346 mRNA downstream 109604 21845044 ~ 21861431 (-) True AMCG00005346
AMCG00005361 mRNA upstream 280 21982801 ~ 21995515 (-) True AMCG00005361
AMCG00005362 mRNA upstream 50415 22032936 ~ 22054967 (-) True AMCG00005362
AMCG00005360 mRNA upstream 79212 22061733 ~ 22078827 (-) True AMCG00005360
AMCG00005359 mRNA upstream 103773 22086294 ~ 22087753 (-) True AMCG00005359
AMCG00005367 mRNA upstream 121621 22104142 ~ 22112254 (-) True AMCG00005367
TU184860 other downstream 225582 21744876 ~ 21745453 (-) True G146938
TU184470 other downstream 1360392 20609354 ~ 20610643 (-) True G146618
TU184357 other downstream 1691289 20274391 ~ 20279746 (-) True G146532
TU184245 other downstream 1947528 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other downstream 1947528 20020710 ~ 20023507 (-) False AMCG00005256
TU185101 other upstream 48304 22030825 ~ 22035272 (-) False AMCG00005362
TU185105 other upstream 54074 22036595 ~ 22101862 (-) True G147109
TU185104 other upstream 101196 22083717 ~ 22084944 (-) True G147108
TU185123 other upstream 145386 22127907 ~ 22130549 (-) True G147121
TU185128 other upstream 163180 22145701 ~ 22158415 (-) True G147124

Expression Profile