RNA id: AMCG00005367


Basic Information

Item Value
RNA id AMCG00005367
length 2595
RNA type mRNA
GC content 0.65
exon number 21
gene id AMCG00005367
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 22104142 ~ 22112254 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGACTGTGAGGGGCCCCTGCCCTGGCAGCGccgccctgctgctgctgctgctcctgggGGCCCGCTGCCGGCCGGGGGCTGCCATGACGAGAGAGGAGAGACACCAGCTGAGGAATCAGGTGGTGGAGATGTTTGACCACGCCTTCCAGAGCTACATGGAGCATGCGTACCCCGCCGATGAGCTGATGCCCCTGACATGTCGAGGGCGGGTGCGGGGGCTGGAGCCCAGCCGGGGGGACGTGGACGACGCACTGGGGAAGTTCTCTCTGACGCTCATCGACACTCTGGACACTCTGGCGTTGCTGAACAAGCCGCTGGAGTTCGAGGAGGCCGTGCAGAAGGTGCTGAGGGACGTGCGTCTGGACAACGACATCGTGGTGTCCGTGTTCGAAACCAACATCCGAGTCCTGGGgggTCTGCTGGGGGGCCACGCGATGGCAGTGATGCTGAAGGAGGGGGGGCAGCACATGGGCTGGTACGGGGACGAGCTGCTGGGCATGGCCAGGGATCTGGGTCTGCGGCTGCTGCCCGCCTTCAACACGTCCAGCGGGCTGCCCTACCCCCGGGTGAACCTGCGCCACGGCGTGCGGGGTCCTGAGACACGGACAGGCACGGAGACGGACACCTGCACTGCCTGCGCCGGGACCATCATCCTGGAGTTCGCTGCCCTGAGCCGCTACACCGGGGAGCCCGTCTTCGAGGATCACGCCCGCCGGGCCCTGGACTTCCTGTGGGAGAAGCGGCAGAGAAACAGCAACCTGGTGGGAACGACAATCAACATCCACTCAGGAGAGTGGGTCCGCAGGGacAGCGGTGTTGGCGCCGGGATTGACTCGTACTACGAGTACCTGCTGAAGGCCTACATCCTGCTGGGGGACGAGCGCTTCCTGGAGCGGTTCAACATTcaCTACGCCTCCATCATGAAGTACATCAGCCAGCCCCCCCTGCTGCTGGACGTCCACATCCACAAGCCCCTGCTGACGGCGCGCACCTGGATGGACTCGCTGCTGGCCTTCTTCCCCGGCCTGCAGgtgttgAAGGGTGACATCCGCCCAGCCATAGAGACACATGAGATGCTGTACCAGGTGACCAAGAAGCACAACTTTCTGCCCGAGGCGTTCACCACCGATTTCCGTGTCCACTGGGCCCAGCACCCTCTCCGGCCTGAGTTTGCAGAGAGCACCTACTTCCTGTACAAGGCCACAGGTGACCCGTACTACCTGGAGGTGGGCCGCTCTGTGCTGGACAACCTGAACCGGTACGCCCGTGTGCCCTGCGGCTTCGCTGCCATGAAGGACGTCCGGACCGGCAGCCACGAGGAccgCATGGACTCGTTCTTCCTGGCGGAGATGTTCAAGTACCTGTTCCTGCTGTTTGCCGACCCCGAGGACCTGCCCTTCGACGTGGAGGACTACATCTTCACCACCGAGGCCCATCTACTGCCCCTGTCCCTGTCCACCACCAACCGCTCCCCCACACGGGCGGTCAACACCACGtcggGGGAAGCTGCCGTCTCGGACCTGGACGATTCAAACTTTGACTGGTCCTGTCCCAACACCCAGCTGCTGTTCCCTGACCCTGCCTTCCCGCGCTCCATCCGGGAGCCAATCAGGACCTCCGTGGATAAGAGCTGCCCGCGCCCCGCCCCCCGGGGtgATGGGGCGTCCCCGGGCCGCCCCCCGCTGCGTGCGCGGGACTTCATGGCAAGTAACCCGGAGCACCTGGAGCTGCTGCGGCGCATGGGAGTCAGCCTCATCCACCTGAAGGACGGCCGAGTGCAGCTGGTGCAGCACGCCACACAGGCGCAGAGCGCGGTGGATGCGGAGGACGGGCTGCGCTTCATGCAGGAGATGATCGAGCTGTCCAGCCAGCAGCAGAAGGAGCAGCTGCCCCCCCGCGCCGTGCAGATCGTCTCGCACCCCTTCTTCGGGAGAGTGCTCAGCAACGCCGCGCTGGTGGCCGGCCGGGTGGCGCTGCTGCAGAGGGGGAGCTGCATGTTCGCAGAAAAGGCCAGGAACCTGCAGAGAGCCGGGGCCATCGGGGGCATCGTCATCGATGACAaggagggcagcagcagtgacacGGCCCCGCTGTTCCAGATGGCGGGTGATGGGCGGAGCACGGATGACATCACcatccccctcctcttcctcttccacaAGGAGGGCACCATCGTACTGGAGGCTCTGAGGGAGTATCAAGAAGTGGAGGTGCTGCTGAGCGACAGAGCGAGGGACCgagCCTCcatatttaaagataaaacTCTGCCCAGCTACATCCTGGAGAGCAGCGGGGAGTCCGAGTGCGTTGAGGAAGAGGAGGGCGACTGCGCTGCCCAGGAGAGCGTCTCCCCTCCTGTCGCCACACCCACCGCCCACCCGGCCGCCGGCGCAGAGGAGCCGGACGTGGTGCTGAGCAGGGCGGGGCCTGGCCAGGAGGGCGGGGTGCTGGACACAGGGGAGGCGGAGCTGGGGGCGGAGTCAGACGCAGAGGCGGGCGGGGATTCCAGCGGCCAATCGATGGACCCCCTGCTGGCCGACTGGAAGGAGGACCTGGAGGCGTTCCAGCAGATGGAGAAGGACGAGCTCTGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity molecular_function

KEGG:

id description
K10086 EDEM3; ER degradation enhancer, mannosidase alpha-like 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185082 lncRNA downstream 121621 21982058 ~ 21982521 (-) False AMCG00005363
TU184873 lncRNA downstream 296836 21806980 ~ 21807306 (-) True G146951
TU184859 lncRNA downstream 358334 21745544 ~ 21745808 (-) False AMCG00005343
TU184798 lncRNA downstream 497607 21589996 ~ 21606535 (-) True G146891
TU184761 lncRNA downstream 542681 21560049 ~ 21561461 (-) True G146857
TU185126 lncRNA upstream 20012 22132266 ~ 22180932 (-) True G147122
TU185169 lncRNA upstream 116945 22229199 ~ 22229991 (-) True G147156
TU185197 lncRNA upstream 310735 22422989 ~ 22423230 (-) True G147184
TU185198 lncRNA upstream 313471 22425725 ~ 22426106 (-) True G147185
AMCG00005359 mRNA downstream 16389 22086294 ~ 22087753 (-) True AMCG00005359
AMCG00005360 mRNA downstream 25315 22061733 ~ 22078827 (-) True AMCG00005360
AMCG00005362 mRNA downstream 49175 22032936 ~ 22054967 (-) True AMCG00005362
AMCG00005361 mRNA downstream 108627 21982801 ~ 21995515 (-) True AMCG00005361
AMCG00005363 mRNA downstream 131686 21971423 ~ 21972456 (-) False AMCG00005363
AMCG00005369 mRNA upstream 33532 22145786 ~ 22146079 (-) True AMCG00005369
AMCG00005368 mRNA upstream 34793 22147047 ~ 22158405 (-) True AMCG00005368
AMCG00005382 mRNA upstream 103705 22215959 ~ 22223377 (-) True AMCG00005382
AMCG00005374 mRNA upstream 251340 22363594 ~ 22368062 (-) True AMCG00005374
AMCG00005375 mRNA upstream 282060 22394314 ~ 22395422 (-) True AMCG00005375
TU185105 other downstream 2280 22036595 ~ 22101862 (-) True G147109
TU185104 other downstream 19198 22083717 ~ 22084944 (-) True G147108
TU185101 other downstream 68870 22030825 ~ 22035272 (-) False AMCG00005362
TU185079 other downstream 121621 21971035 ~ 21982521 (-) True AMCG00005363
TU184860 other downstream 358689 21744876 ~ 21745453 (-) True G146938
TU185123 other upstream 15653 22127907 ~ 22130549 (-) True G147121
TU185128 other upstream 33447 22145701 ~ 22158415 (-) True G147124
TU185150 other upstream 83112 22195366 ~ 22198768 (-) True G147143

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000010_03116123_03125761.mRNA True 3446 mRNA 0.50 20 CI01000010 3116123 ~ 3126609 (+)