RNA id: AMCG00005368


Basic Information

Item Value
RNA id AMCG00005368
length 971
RNA type mRNA
GC content 0.61
exon number 7
gene id AMCG00005368
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 22147047 ~ 22158405 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCCTGGAGGGCAGCGGACATTTTGGAGTAGCGCTGCAGTGACTGCCGTAGTTTGCGTCgcgttgtgcagtgtgtgcagtattcAGTGGGTGCTCAGGGTACAGCCGGCAGCCATGGTGCGGAAGCTGAAGTTTCATGAGCAGAAGCTGCTGAAGAAGGTGGACTTCCTGAACTGGGAGGTGGACAACAACCTGCACGAAGTGAAGGTGCTGCGCAGATACCACATCGAGAGGAGGGAGGACTACACAAAGTACAATAAGCTGAGCCGCAGTATTCGGGAGCTGGCCCAGAAGATCCGGGACCTGAACGAGAAGGACGGCTTCCGAGCGCAGAGCACGGCGCGGCTGCTGGAGAAACTGTATGGCGTGGGTCTGATTCCCACCCGGGAGAACCTGGCGCTCACCGAGAAGGTCACCGCCTCCGCCTTCTGCAGgagGCGCCTGCCCAGTGTGCTGGTGAAGCTGCGCATGGCCCAGAACCTGAAGACCGCCGTGACCTTCATCGAGCAAGGCCGTATCCTCCCGCGCTCTATCGCTCCACTGTCACTCCATCACCCCTTCGCTCCGTCGCTATGCTACCACTCAGGACAGCGGGAGAGCAGGGGAGGGCAGGGCGGGAAGGGAAAGGACGGCAGAGTGGGGGTCCTTGACTCAGACCCAGATGTGCGCGTCGGACCCGAGATCATCACTGACCCTGCCTTCCTGATCACCAGAGAGGTGACAAGGTCAGGCTGTACCCTGTGGTTTGCCCCCCCCCTGTACTTCCTGTGTGTCCTGCCCGCAGAGCTCAGTCACGcaccgctgctgctgctgccatcCTTCCTCTTCTGCTGCTCCGTCCTCTTGCCCGGCACAGATGCTCATGGGCTCTCAGGTGTCACAGTAGCTGCCGACTCGGCGAGTATGGTGGCCCACTCTGACTGCTCCTCcttgtgtgtgcgtctcacCGCTCTGGTCCTGTCCTCTCGGTGA

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14560 IMP3; U3 small nucleolar ribonucleoprotein protein IMP3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185082 lncRNA downstream 164526 21982058 ~ 21982521 (-) False AMCG00005363
TU184873 lncRNA downstream 339741 21806980 ~ 21807306 (-) True G146951
TU184859 lncRNA downstream 401239 21745544 ~ 21745808 (-) False AMCG00005343
TU184798 lncRNA downstream 540512 21589996 ~ 21606535 (-) True G146891
TU184761 lncRNA downstream 585586 21560049 ~ 21561461 (-) True G146857
TU185169 lncRNA upstream 70794 22229199 ~ 22229991 (-) True G147156
TU185197 lncRNA upstream 264584 22422989 ~ 22423230 (-) True G147184
TU185198 lncRNA upstream 267320 22425725 ~ 22426106 (-) True G147185
AMCG00005369 mRNA downstream 968 22145786 ~ 22146079 (-) True AMCG00005369
AMCG00005367 mRNA downstream 34793 22104142 ~ 22112254 (-) True AMCG00005367
AMCG00005359 mRNA downstream 59294 22086294 ~ 22087753 (-) True AMCG00005359
AMCG00005360 mRNA downstream 68220 22061733 ~ 22078827 (-) True AMCG00005360
AMCG00005362 mRNA downstream 92080 22032936 ~ 22054967 (-) True AMCG00005362
AMCG00005382 mRNA upstream 57554 22215959 ~ 22223377 (-) True AMCG00005382
AMCG00005374 mRNA upstream 205189 22363594 ~ 22368062 (-) True AMCG00005374
AMCG00005375 mRNA upstream 235909 22394314 ~ 22395422 (-) True AMCG00005375
AMCG00005373 mRNA upstream 258515 22416920 ~ 22422016 (-) True AMCG00005373
TU185123 other downstream 16498 22127907 ~ 22130549 (-) True G147121
TU185105 other downstream 45185 22036595 ~ 22101862 (-) True G147109
TU185104 other downstream 62103 22083717 ~ 22084944 (-) True G147108
TU185101 other downstream 111775 22030825 ~ 22035272 (-) False AMCG00005362
TU185079 other downstream 164526 21971035 ~ 21982521 (-) True AMCG00005363
TU185150 other upstream 36961 22195366 ~ 22198768 (-) True G147143

Expression Profile