RNA id: AMCG00005373


Basic Information

Item Value
RNA id AMCG00005373
length 2282
RNA type mRNA
GC content 0.57
exon number 9
gene id AMCG00005373
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 22416920 ~ 22422016 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACACTCCTGCTGTCTGAGAGGACGAAGTTCTGAGACACTCTccctcacacgcacacacacatgcgcacacacacacagacacacacacagacacacgcacgcacacacacacacacacacacacacacacttgcagaTCAACCTAAGAGCTAACTTCTGCTGGGACAccgagataaaaaaaaacaaattttccaATGGACGAATTAGACAGTTTACTGGAGGCGCTGGCTCAGAGCACTTCCCACAATGCAGAGGGGCAGGATGATGTCACCGAGAAGGACGGCGAAGTGACCGGGCAGGTCCAGCCCGTTTACACCACCAGATTCAAGGGCAGTCCAGCGACGGACGCAGACGCGGACCACGTGTACAGTGAGGTCCCAGAGCCAGTGGAGGTTGGGGTCCTGAGCCCAGGGTCGGCCGTACGGGAGCTGGACAGCATCATGAAGGGCCTGCAGGCTCTAGACCTGGACCTGGGGCTTCTTTCAAATTTTGAACTGGTTTCCTGTCGGCTGGTCCAGCGCTCATCCACGGGGTTAAAGCCTATTTATCTTTCAATTCCTGTCCAGATCCCTGGTGAGCCTGCCCTCTCAGCCCCACCGCCCCTCGTACCGAAGGGAAAGGACAGAGCGGTGGAGCAGAAGGAGAAAGAGGCTCAGAGACCGGCACAGGTGGAGACAAAGACCTCGGACCTGGCACCTGCCAAGCCAGCCAGCTCTGTCCCCGGTGGCAAAGGGGCCTCCATCGACGACCTCCTGGGGGACCTCAACACCAGTATGGAGAAGATGGGCGTGCACACCACGGCCAAGGGCCAGTGCGCGTCCTGTGGCAAGTGCATCGTGGGAAAGgtgaTCACGGCGCTGGGGGGGACCTGGCACCCGGAGcactttgtgtgctgtgtgtgcggCGTGGAGCTGAAGGCTTTCTTCGAGAGGGACGGGAAGCCCTTCTGTGAGGCGGACTACCAGAAACTGTTCTCCCCTCGCTGCGCGTACTGCAGCGGGCCCATCCTGCAGAACATCCTGACGGCGATGGACCGGGCATGGCACCCAGAGCACTTCTTCTGCACGGAGTGTGGGAAGGTGTTCGGCTCTGAGGGTGAGAGATGGACTCACTGCTGTCACGCGCTGGGGGACACGCTCACTGACAGAGACAGTGACTGCTCCCCCGACACAGGAAGTGATGTAATTGTATCAGGCATAGGGTTCCTGGAGAACGAGGGCAAGCCGTACTGCCATGAAGATTTCTACCGTCTGTTCGCGCCGAAATGCACCGGCTGTGGACAACCGGTGAAGGAGAACTACCTGTCAGCGGTGAACGGCACCTGGCACCCGGACTGCTTCGTGTGCACCgACTGCCTCACCCCGTTCCGTGACGGCTGCTTCATGGAGCTGGAAGGGCGGCCGCTGTGCTCCCTGCACTTCCACTCCCGGCAGGGCACGCTGTGTGGGGGCTGTCAGACACCCATCACGGGCCGCTGCGTGTCTGCCATGGGCCGTCGCTTCCACCCGGAGCACTTCGTCTGCGCCTTCTGCCTCCGCCAGCTGTCCCAGGGCGTGTtcaaagagagggaggagaagccCTATTGTGCCAGCTGCCACGACAAACTCTTCATTTAGAGGGAGGTGGAAATATCTCGCAAGAAACAGGGCCTTCAAGATTTTCTTCAACCGCcagtttgatttaattccaCAATGCAATCACAAGGATTTGCACTGTATAAAATCCAGCTTTAAGTCACGTAACTGAATGGATTGTTTTCTGCACTGGAGCCACTGTCGCCCTTGCCTGGTAGCTCACGTGCCGAGGCACAGAGCTGTGAACACCGGCTGGACTCATTTTTCACACCGGGTTTGCAAAGAAACAGCaagacttttttctttctccaccGTTCCCGACTCTGCTGATTTTAACCTGACAGCATCAGAGCCAGGGGGAAGCACCGACCCAGGTTTTCACTTCCAACCTTACGCTTCCAAACTTCCGAGCCTTACGGTTCGTCTGAGTGCCGGACGCAGCTGTACGCTTCCCTGCTGCCGTGGGAAATGAGCAGCACCATTGATCAGCAAAACAGGAATCTCTGGAGCCCCCTGTCTGTGGCAGGGCCAATCAGAGACCCCGTCTGTAGCACCGTCAATCAGAGCCACCTGTCTGTGGCAGGGCCAATCAGAGCTCCCTGTCTGTGGTAGGGCCaatcatgtttttaatccaTAGTTTACAACTTTTCAGCACCGACAGAGTCCAAATGCTCCTGCTGCTGACCCggctttccattttattttat

Function

GO: NA

KEGG:

id description
K05760 PXN; paxillin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185169 lncRNA downstream 186929 22229199 ~ 22229991 (-) True G147156
TU185126 lncRNA downstream 235988 22132266 ~ 22180932 (-) True G147122
TU185082 lncRNA downstream 434399 21982058 ~ 21982521 (-) False AMCG00005363
TU184873 lncRNA downstream 609614 21806980 ~ 21807306 (-) True G146951
TU184859 lncRNA downstream 671112 21745544 ~ 21745808 (-) False AMCG00005343
TU185197 lncRNA upstream 973 22422989 ~ 22423230 (-) True G147184
TU185198 lncRNA upstream 3709 22425725 ~ 22426106 (-) True G147185
AMCG00005375 mRNA downstream 21498 22394314 ~ 22395422 (-) True AMCG00005375
AMCG00005374 mRNA downstream 48858 22363594 ~ 22368062 (-) True AMCG00005374
AMCG00005382 mRNA downstream 193543 22215959 ~ 22223377 (-) True AMCG00005382
AMCG00005368 mRNA downstream 258515 22147047 ~ 22158405 (-) True AMCG00005368
AMCG00005369 mRNA downstream 270841 22145786 ~ 22146079 (-) True AMCG00005369
TU185150 other downstream 218152 22195366 ~ 22198768 (-) True G147143
TU185128 other downstream 258505 22145701 ~ 22158415 (-) True G147124
TU185123 other downstream 286371 22127907 ~ 22130549 (-) True G147121
TU185105 other downstream 315058 22036595 ~ 22101862 (-) True G147109

Expression Profile