RNA id: TU179547


Basic Information

Item Value
RNA id TU179547
length 1080
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G142737
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 109314 ~ 110393 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tggtggTTCTTCCTGGCAATAGTAGCTCCCTGGGAATGTGACTGAACATCTCTGCCAGGTAAAATCAGTTCATCTTTCACCCCTTCCATGAAATTAACAGTTTATGCAGTGCTCACCTACATTACAGAGAGAAATCAAATACCAAATTGCCATTCGTAGGAAAGACACTGTACTCAGCTTCATATGATCTTTAGATAATAAAAATCATCCCCTGAAACGGGCTAGTGTGTGGGCAGATACGAGATTACCTGttggttaaaataaatggttgaTGTACAGACTTCAATTAAGCTGCCATTATTCCTTACTTACAGAGTCCAGATTGTGTAGTCAATTAAACAGTAGCATTATCTTCTGGTTGTTGCTAGTCAATCAGTAATGCTCCCTGTACCAACTCAagtctgaaaatattttttgaatatatttctgaatataagTTGGTCAGCCCCAAGCCTTtcttgataaaaacaaaattataacaatataagAGAAATAACCTCCAAGTCAAATCAAATACCTGACTTTCCTGTCTAAATCTTCATGGGTCTCTGGTACAACCATCTTCTTATAATCTAATTAAATAGCAAAGTACCTGATTGTGCCAAAGTCCAGCAGTGGAATAGACTGGAAGGTGTAGTGTGTGACGTCCCCTGATCTGACTTGTTTCCATTGAATGCCTGTTCCTTACTATGATAAACAGCACCTTAAATACCTTCTTCCGGACCTGTATTGACAGCAAAACtgattttctctttatttacaattttaagtATATAATGTTACTTAATAATCGAATTGGCAGAGATTATGATCTCAAAAAGCCATGatgctttcatttttcatgtattttgtaaatgaataTCAAACTGAGGCCTTGCCATTCATTTCAGTGTCTCACactctattttttattttacattactttGAATCATAACCATTGATTGTACTGGATTCTCATGTTTATCGATGCAGAATATTAAAATCTTCatgaatttaacttttttgttttgtgagatTTCATGGGTCCACATATTAAAagcattataaatcacatatgagaaaccagccaatgacagagca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179582 lncRNA downstream 6114 116507 ~ 122522 (+) False AMCG00004749
TU179589 lncRNA downstream 68994 179387 ~ 269208 (+) True G142776
TU179669 lncRNA downstream 325029 435422 ~ 439221 (+) True G142835
TU179699 lncRNA downstream 455990 566383 ~ 570143 (+) True G142847
TU179740 lncRNA downstream 557564 667957 ~ 701758 (+) True G142881
AMCG00004747 mRNA upstream 111 48855 ~ 109203 (+) True AMCG00004747
AMCG00004748 mRNA upstream 78629 20381 ~ 30685 (+) True AMCG00004748
AMCG00004745 mRNA upstream 101086 5996 ~ 8228 (+) True AMCG00004745
AMCG00004749 mRNA downstream 6098 116491 ~ 122965 (+) True AMCG00004749
AMCG00004746 mRNA downstream 23988 134381 ~ 138253 (+) True AMCG00004746
AMCG00004759 mRNA downstream 369453 479846 ~ 507826 (+) True AMCG00004759
AMCG00004757 mRNA downstream 429382 539775 ~ 557281 (+) True AMCG00004757
AMCG00004758 mRNA downstream 540309 650702 ~ 659789 (+) True AMCG00004758
TU179968 other downstream 2330148 2440541 ~ 2520689 (+) False G143075
TU179967 other downstream 2438194 2548587 ~ 2559080 (+) True G143075
TU180082 other downstream 3012688 3123081 ~ 3124482 (+) True AMCG00004788
TU180081 other downstream 3012830 3123223 ~ 3124482 (+) False AMCG00004788
TU180140 other downstream 3267422 3377815 ~ 3395158 (+) True AMCG00004793

Expression Profile