RNA id: TU179577


Basic Information

Item Value
RNA id TU179577
length 885
lncRNA type inter_gene
GC content 0.44
exon number 4
gene id G142765
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 105040 ~ 109211 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agaTCAAATAGCATTCGTGCAAAAAaagtttatattgtatatacagcTGCAGTTAGCTGTAAACGGGTCCTCCCGAGCTCTGTCCTCTGTTGCACCAACAAGGCTTCTGAACTCTTGTGGTTTTTCAGCCTTTCCCCAAGTCATCAGTTTCCCTGAGATAAAGACTGCTGCATGTTTTCAAAGTTCGTTTGATCCAGACCTACCCCCCCTGTAAGTCCCCCCTCTCTTGgaaaataattatgcattttggGTTTCTTGCAAGATTATTGTGTGCCTTTgggtgaggggggagggggaacaGTAGCGGTGGCTGTGGTGAGGAACACAGGTTTTAagagtttttttgttaaattttattttattttaatttttgaaaatgcaaagctGAGTACATATTCAATCATTCAAAGGCTTTTTCGATGAGAAGTGGTTTGATAGTTCTTTCTGAAGAACTGACGAGTTGAGATTGTATCTTTACAGCCTCTtactgtttctctctccacaACTCTCCCCTTCTCCTTAGTGTCTGTTAGCAATGCGTTTTAGTAGAGGTTCATCATAAACCCAGCACTCTCCATCCTCGTGGAAGAGCCGCGTCTCCCACTGCTTCTCATTCTCTTTCCTCTCCCGTGCCTCTGCTCTCTGCTTCTCCTCCAGCCTGTGCTTCCCATCTGTTGCAGCATCAATGTCCTTCAGTTTTAAATTCACAGTCACGTCTTTCCAGAGTCTTCGAGACTCATATTCTAACTGGTCCTCCAGCTTCCTCACTTTCTTCTTGATGATGCCAATCTTCTTAGTGTCTATAAACAATGTATTCTCCCCTGATGCCCACTTTGCATACATCACCCCATTCCACTCTCCCTCAACAGAACAAAAGGCCTTCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179579 lncRNA upstream 53 109264 ~ 110492 (-) True G142766
TU179656 lncRNA upstream 197905 307116 ~ 351627 (-) True G142828
TU179753 lncRNA upstream 595079 704290 ~ 705016 (-) True G142890
TU179754 lncRNA upstream 623273 732484 ~ 732959 (-) True G142891
TU179766 lncRNA upstream 671207 780418 ~ 782340 (-) True G142902
AMCG00004750 mRNA upstream 106150 215361 ~ 221177 (-) True AMCG00004750
AMCG00004751 mRNA upstream 157763 266974 ~ 305834 (-) True AMCG00004751
AMCG00004752 mRNA upstream 201653 310864 ~ 364423 (-) True AMCG00004752
AMCG00004756 mRNA upstream 267907 377118 ~ 402042 (-) True AMCG00004756
AMCG00004755 mRNA upstream 306151 415362 ~ 422526 (-) True AMCG00004755
TU179583 other upstream 10484 119695 ~ 122527 (-) True G142770
TU179586 other upstream 18567 127778 ~ 130703 (-) True G142773
TU179730 other upstream 534793 644004 ~ 646379 (-) True AMCG00004763
TU180047 other upstream 2600343 2709554 ~ 2710004 (-) True G143145
TU180095 other upstream 3029646 3138857 ~ 3160673 (-) False AMCG00004790

Expression Profile