RNA id: TU179579


Basic Information

Item Value
RNA id TU179579
length 1229
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G142766
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 109264 ~ 110492 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaataaataaagctttattgtttttgaataGTGATAGTTATCTGCACGGGatgacatttatatacacaataaGACGTATAGGAATTTTcaggaaatgctgctctgtcattggctggtttctcatatgtgatttataatgctTTTAATATGTGGACCCATGAAatctcacaaaacaaaaaagttaaattcatGAAGATTTTAATATTCTGCATCGATAAACATGAGAATCCAGTACAATCAATGGTTATGATTCaaagtaatgtaaaataaaaaatagagtGTGAGACACTGAAATGAATGGCAAGGCCTCAGTTTGAtattcatttacaaaatacatgaaaaatgaaagcatCATGGCTTTTTGAGATCATAATCTCTGCCAATTCGATTATTAAGTAACATTATATacttaaaattgtaaataaagagaaaatcaGTTTTGCTGTCAATACAGGTCCGGAAGAAGGTATTTAAGGTGCTGTTTATCATAGTAAGGAACAGGCATTCAATGGAAACAAGTCAGATCAGGGGACGTCACACACTACACCTTCCAGTCTATTCCACTGCTGGACTTTGGCACAATCAGGTACTTTGCTATTTAATTAGATTATAAGAAGATGGTTGTACCAGAGACCCATGAAGATTTAGACAGGAAAGTCAGGTATTTGATTTGACTTGGAGGTTATTTCTcttatattgttataattttgtttttatcaagaAAGGCTTGGGGCTGACCAActtatattcagaaatatattcaaaaaatattttcagactTGAGTTGGTACAGGGAGCATTACTGATTGACTAGCAACAACCAGAAGATAATGCTACTGTTTAATTGACTACACAATCTGGACTCTGTAAGTAAGGAATAATGGCAGCTTAATTGAAGTCTGTACAtcaaccatttattttaaccaaCAGGTAATCTCGTATCTGCCCACACACTAGCCCGTTTCAGGGGATGATTTTTATTATCTAAAGATCATATGAAGCTGAGTACAGTGTCTTTCCTACGAATGGCAATTTGGTATTTGATTTCTCTCTGTAATGTAGGTGAGCACTGCATAAACTGTTAATTTCATGGAAGGGGTGAAAGATGAACTGATTTTACCTGGCAGAGATGTTCAGTCACATTCCCAGGGAGCTACTATTGCCAGGAAGAAccaccaaaaagaaaaaaaaaaagaaataataataataataaacaaatatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179577 lncRNA downstream 53 105040 ~ 109211 (-) True G142765
TU179656 lncRNA upstream 196624 307116 ~ 351627 (-) True G142828
TU179753 lncRNA upstream 593798 704290 ~ 705016 (-) True G142890
TU179754 lncRNA upstream 621992 732484 ~ 732959 (-) True G142891
TU179766 lncRNA upstream 669926 780418 ~ 782340 (-) True G142902
TU179784 lncRNA upstream 678610 789102 ~ 792949 (-) True G142920
AMCG00004750 mRNA upstream 104869 215361 ~ 221177 (-) True AMCG00004750
AMCG00004751 mRNA upstream 156482 266974 ~ 305834 (-) True AMCG00004751
AMCG00004752 mRNA upstream 200372 310864 ~ 364423 (-) True AMCG00004752
AMCG00004756 mRNA upstream 266626 377118 ~ 402042 (-) True AMCG00004756
AMCG00004755 mRNA upstream 304870 415362 ~ 422526 (-) True AMCG00004755
TU179583 other upstream 9203 119695 ~ 122527 (-) True G142770
TU179586 other upstream 17286 127778 ~ 130703 (-) True G142773
TU179730 other upstream 533512 644004 ~ 646379 (-) True AMCG00004763
TU180047 other upstream 2599062 2709554 ~ 2710004 (-) True G143145
TU180095 other upstream 3028365 3138857 ~ 3160673 (-) False AMCG00004790

Expression Profile