RNA id: TU179583


Basic Information

Item Value
RNA id TU179583
length 2258
RNA type TUCP
GC content 0.39
exon number 2
gene id G142770
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 119695 ~ 122527 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACagatattcaaaatgtatttattgtcatttagatacaaaattataaatcattCCACATTCACAAGTATTGAAAACAAAGAAGTCctcaattattcaatttgatatTTAGGAGTCAAAGGCAGGATTTGAATAGCCAGACTTCTCAGCTATGGCAAAACAGTTCCTCACAACTATGAGGTTGGAGAGGAGGggtttaaaaatgaacttgCATCCCCCTCCCCATGGGGAAAAGgtgaaaatgtgaatgaatgGTTCACAGAATTAACAGGGTACAAATAGTTATAAAATCAAGATCAGGTTAAATCTGTCATGTTGTTAACGGCCCAATAATGGACCACCCATTCTAGGAGAGCAATATTAAAGCTGAACACTAGGTGGGGACAAGTGTAGGTTGCAGCAGAATGCCAAATCTACAAGTCAACATTCACAGTCTGACAgtatattagtttaaaaaattgTCAACATTGGAAAGGGACAGTTTTCAATCCCCAGATGCCAATTCCACATAGAGCTTCAGGGAAAAGGGCAGCTACTGCAGAGAAGGGTCTCCTCCATGCCCCCAGATGTCAATCATGCAGTCTTGCTGCTGCAGACCATTCTGGAAAACAGGACCTCTGTTTAGGCAAGCATGAAAATGGGTTTTCTGCAGCCCAGCTCGGACATCAGGATTTACAGAACTAGAACCTTCACAGACTGGTTGCTCAGCTAAGCTTGGGGATGAACTCAGAATTCTGACTATCATCATGAGATCAGGGAGAGAGTTCAAGAATAAAGATCATCATTTCATCCCCCACAAAATCCTGGAATTCACAATTTACTATTGCATacacatttggaaataaaatccCACTATACCTCATATCCTTTAGATCACTTCATGGCAAAAGTAAGAGCCTGCAGAAGGAGAAACACAAAAGTTAATAAAGCCAGGGAGAGATCACCAATCCAATCTGGCAGTGCCAAGTTAACCTCAGAATAGAAATGGAACGGTATGGAGTATAATCACAGACTTCATTTGGCAGAATCTGTTCATCATAGGTttgatattaaatacatttgaactgcAAGATCTCTTACCAGTTTGAAGTCACCATTTCAACTGATCTAAAAGGAGAAgcaataaaatagttaaaaacaagaaattcCTGATTGTCAGGATCAGTGTCTTGTGGGTTCTTCAGTTTATAAGGACTACCACATGTATTCTTCAGGTCAGACATTTGATACCATCATTACTGAACCCAGCTACTAAGGATGTATGAAATGGAGTAAGGTTTTACATTAGCTGCCAGTTAAGAGTATTGCAGAGTAAATCAAAAAGGCAAAGTACCTACCTTGGCTCCACCAAGCAGTGGAGTACAAGGGTGCAGTCTGAATCTTCAAAATCCTGCAAAGATTAAGACCATGAACATACTCTACTAaccagtgggggaaaaaaaaacatgttcacaaTGGACCAGTTCAGTTAGAGCTAATATACAGACTTCATGGTAAAGTCAGTCAAGTTATTCATCATACAGGTCAGAGGAAAACcataacaaatcaaaacagGCATCACAAATTTGACTCCACAGATTAATTTAGTTGAAAcaattatgcattttgtattaattattccaGCTACATATAGTCCTTGTATAGCCTTGCCAACCAATGGAGAAATGGAGTGAGACATTTGCAAGCCTGCTAGAGGTATATAAAAGGAAATTAGAGTTCTCCAAGCCATATATACTTACAGCAATGTACACAATGAAACATCCCCCACTCAGTGCCCTGCAAGGTTTTTTCCGTTCCTCAAAGCAAAGTTTAAAGTCCAGCCGAGTAAATTATCTCCTATGGCAATTTAACCGACCGATTAGCCCGAATGAGTTAAATCAGGTAGGAGGAATGGGGCCCAGGACGGTTTTCCTCCCAGCCAAATTTTATATACAAGAGTTGATGGGCCGTTACTTCTCATACATTCCAATATCTCCTGGGcctgcagcaaaaaaaaaaaaagactgcaaagggttaagcACAGTATATACTACATCCATATGTAAAGCAAGTTTGCGAAGACATCTTGCATAGCTGTGATTAGGAAGTGTACATTCCAAGGCAATACCTATTTAATAATTCAGTATAGTGTACTTCAAAAGTAATTTACAACCCTAGTGTAAGAGGCACTCATTTGTAGTCTTTAGATCTCTGGTTCAGAATAATACAGAAGTCATCAACATGATCAGAGACCTGGTTCAAAATTCATCATTCCAGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179579 lncRNA downstream 9203 109264 ~ 110492 (-) True G142766
TU179577 lncRNA downstream 10484 105040 ~ 109211 (-) True G142765
TU179656 lncRNA upstream 184589 307116 ~ 351627 (-) True G142828
TU179753 lncRNA upstream 581763 704290 ~ 705016 (-) True G142890
TU179754 lncRNA upstream 609957 732484 ~ 732959 (-) True G142891
TU179766 lncRNA upstream 657891 780418 ~ 782340 (-) True G142902
TU179784 lncRNA upstream 666575 789102 ~ 792949 (-) True G142920
AMCG00004750 mRNA upstream 92834 215361 ~ 221177 (-) True AMCG00004750
AMCG00004751 mRNA upstream 144447 266974 ~ 305834 (-) True AMCG00004751
AMCG00004752 mRNA upstream 188337 310864 ~ 364423 (-) True AMCG00004752
AMCG00004756 mRNA upstream 254591 377118 ~ 402042 (-) True AMCG00004756
AMCG00004755 mRNA upstream 292835 415362 ~ 422526 (-) True AMCG00004755
TU179586 other upstream 5251 127778 ~ 130703 (-) True G142773
TU179730 other upstream 521477 644004 ~ 646379 (-) True AMCG00004763
TU180047 other upstream 2587027 2709554 ~ 2710004 (-) True G143145
TU180095 other upstream 3016330 3138857 ~ 3160673 (-) False AMCG00004790
TU180096 other upstream 3016330 3138857 ~ 3200167 (-) False AMCG00004790

Expression Profile