RNA id: TU179586


Basic Information

Item Value
RNA id TU179586
length 499
RNA type TUCP
GC content 0.62
exon number 2
gene id G142773
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 127778 ~ 130703 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TACAAACAGCGCATGAGCGGGGAGCGGACACTTCAAATGTTCtgataagaaaacaaaccaaaccacacACGTTGTGTATTATTACCTCTGTCTAATTGAACAAACATGTCGGCGTCTCCGTGTCTGGACGCCCGCCTGGCCTCGGCGCTGACCGGGCTGCTGAGAGCCGCCCTGTGGGAGATCGGGGAGGCGGTGGCAGAGACGGTGTCGGAGCACCGAGCGGAGATAACCCGCAGGGACGCGGAAAACGAGGCGCTGAGACGGAGGCTGCAGGAGCTCCTGGCGGCGGGGGAGGCGGCTGTGTGTGGCTGGAGCTCCGGAGCGGACGGGCCGCCTGTGAAGAGCCGAGGAGCAGAGTGGAGCTGCggccagagagagggagagcccCGCGGAGCTGTCGCTGgagctgtagaaTCCACTGAGCAGCAGCCCTGTGAGCAGGAGTGGGACTTCAGTCTGAAGCAGGACCCGGAGCCCATAGTTACTGAAGGCAACCAAG

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0006259 DNA metabolic process biological_process

KEGG:

id description
ko04110 Cell cycle
ko04114 Oocyte meiosis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179579 lncRNA downstream 17286 109264 ~ 110492 (-) True G142766
TU179577 lncRNA downstream 18567 105040 ~ 109211 (-) True G142765
TU179656 lncRNA upstream 176413 307116 ~ 351627 (-) True G142828
TU179753 lncRNA upstream 573587 704290 ~ 705016 (-) True G142890
TU179754 lncRNA upstream 601781 732484 ~ 732959 (-) True G142891
TU179766 lncRNA upstream 649715 780418 ~ 782340 (-) True G142902
TU179784 lncRNA upstream 658399 789102 ~ 792949 (-) True G142920
AMCG00004750 mRNA upstream 84658 215361 ~ 221177 (-) True AMCG00004750
AMCG00004751 mRNA upstream 136271 266974 ~ 305834 (-) True AMCG00004751
AMCG00004752 mRNA upstream 180161 310864 ~ 364423 (-) True AMCG00004752
AMCG00004756 mRNA upstream 246415 377118 ~ 402042 (-) True AMCG00004756
AMCG00004755 mRNA upstream 284659 415362 ~ 422526 (-) True AMCG00004755
TU179583 other downstream 5251 119695 ~ 122527 (-) True G142770
TU179730 other upstream 513301 644004 ~ 646379 (-) True AMCG00004763
TU180047 other upstream 2578851 2709554 ~ 2710004 (-) True G143145
TU180095 other upstream 3008154 3138857 ~ 3160673 (-) False AMCG00004790
TU180096 other upstream 3008154 3138857 ~ 3200167 (-) False AMCG00004790
TU180357 other upstream 3983044 4113747 ~ 4116414 (-) False AMCG00004819

Expression Profile