RNA id: TU179656


Basic Information

Item Value
RNA id TU179656
length 781
lncRNA type sense_over
GC content 0.45
exon number 2
gene id G142828
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 307116 ~ 351627 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtaaatatttttacagtgagggaaaaaagtatttgatcccctgctgattttgtacgtttgcccactgacaaagaaatgatcagtctgtaattttaatggtaggtgtattttaacagtgagagacagaataacaacaaaaaaatccagaaaaacacatttcaaaaaagttataaattgattggcatgttaatgagggaaataagtatttgacccctatcaatcagcaagatttctggctcccaggtgtcttttatacaggtaacgagctgagattaggagcactctcttaaagggagagtggcaaaacttggtggcaaaacccttgttggcaatcacagaggtcagacgtttcttgtagttggccaccaggtttgcacacatctcaggagggattttgtcccactcctctttgcagatcctctccaagtcattaaggtttcgaggctgacgtttggcaactcgaaccttcagctccctccacagattttctatgggattaaggtctggagactggctaggccactccaggaccttaatgtgcttcttcttgagccactcctttgttgccttggctgtgtgttttgggtcattatcatgctggaatacccatccacgacccattttcaatgccctggctgagggaaggaggttctcacccaagatttgacagtacatggccccgtccatcgtccctttgatgcggtgcagttgtcctgtccccttagtccttcctcttctgaccctctcatcccctcacgcgtctcttcctgcttgtctgcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179579 lncRNA downstream 196624 109264 ~ 110492 (-) True G142766
TU179577 lncRNA downstream 197905 105040 ~ 109211 (-) True G142765
TU179753 lncRNA upstream 352663 704290 ~ 705016 (-) True G142890
TU179754 lncRNA upstream 380857 732484 ~ 732959 (-) True G142891
TU179766 lncRNA upstream 428791 780418 ~ 782340 (-) True G142902
TU179784 lncRNA upstream 437475 789102 ~ 792949 (-) True G142920
TU179825 lncRNA upstream 818386 1170013 ~ 1170516 (-) True G142953
AMCG00004751 mRNA downstream 1282 266974 ~ 305834 (-) True AMCG00004751
AMCG00004750 mRNA downstream 85939 215361 ~ 221177 (-) True AMCG00004750
AMCG00004756 mRNA upstream 25491 377118 ~ 402042 (-) True AMCG00004756
AMCG00004755 mRNA upstream 63735 415362 ~ 422526 (-) True AMCG00004755
AMCG00004754 mRNA upstream 73645 425272 ~ 434187 (-) True AMCG00004754
AMCG00004753 mRNA upstream 86347 437974 ~ 445479 (-) True AMCG00004753
AMCG00004761 mRNA upstream 208498 560125 ~ 584445 (-) True AMCG00004761
TU179586 other downstream 176413 127778 ~ 130703 (-) True G142773
TU179583 other downstream 184589 119695 ~ 122527 (-) True G142770
TU179730 other upstream 292377 644004 ~ 646379 (-) True AMCG00004763
TU180047 other upstream 2357927 2709554 ~ 2710004 (-) True G143145
TU180095 other upstream 2787230 3138857 ~ 3160673 (-) False AMCG00004790
TU180096 other upstream 2787230 3138857 ~ 3200167 (-) False AMCG00004790
TU180357 other upstream 3762120 4113747 ~ 4116414 (-) False AMCG00004819

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
striped catfish (Pangasianodon hypophthalmus) TU448074 True 403 lncRNA 0.51 1 NC_047620.1 18327771 ~ 18328173 (+)