RNA id: TU179669


Basic Information

Item Value
RNA id TU179669
length 2546
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G142835
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 435422 ~ 439221 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAATGATTGGATACATTtattaacacaaaattaaaaatccatgtacagaggaaaaaacaaacaaacatacatttaaatctaaCGTGAATTTAGATATTCAGTGTTCatcaaaaccttttatttttagtaaactTAATATTAGACCCAACTGATTCATGGGATTTTTTATTCTTCTGGAATAAACAGACAAGATGTGGAGATGCATTCCGTTTCTCCTTTTTAGCACTTGCCAATTTAGACAATCTGGTATCAAACAGACAAATGCCatggtttattatttatgtttacacCACTCACCTTTTCCATTTGCCTCCGAAAACAGCAAACGATAATAATGGTTTTGTTAGCGATATTCCCATCCTCTAATTTTGTCCTTCATGGAGGAGATTCTCTTGTTTGAGGAGGTTGTCCTAAAACTCTTAATTTGCACTCTTGCAGGCCACAGTCAGAATTTTACTGCATCATGCGACTACTATAAAGTAAAACCAGATTTGGAAAAATACAAGACATTTGAAGGTTAACTTAAAACTTATTGCCAAATTCTAGCAAATTACTcaattaattgctttttaaaatggcaaaaccACTTAAGCCAAGACATTAGACTGTGGTCGATCATAGACAAAGGTTTTACATTTGCAGTTGTGTAAGAATATGGGGAAAGGGTTTGATTTAAAAAGTCAGATTACTAGCAGGAAACACAGTTAGTTTCTCTCCTCCCTGAATTTGGAAagttaacaaataaattaatataaaagcaTAAATACTATGAACAATGTAACCTACACTTAAAACATAATCTTAACTATGTACAGTTATAGGGAATGGTACTccaccacatttaaaaatgcagggaATAAGCAGTGCCTCTAAAAGTAAGAATGAAATTACCAGCTGCATGATGGCCCAACTTAATGCATCCCAACTCCCCTAGGCCAGACTCATGGGTTAGGGACCAGTTATAAATCAGGTTAGAAGCTCACCATGAATGTAATTTTGTTCCCCATTGACAATGGTCAGCCACCTCAAATCTGGTTGGGTTCACCAAGTTGAATACATGCTTTGGTTTAGAGGCATATGCATAATTTCAATCCAAAGCAAGAAATacttatttagattttaaaaaacaaaaaacagtggtttcactttattttttccttccaggaataaaacaaagatcTAACTTAACCAGGCATTTCTAAAAACTGATCTGAACTAGATTCACCCAgcaaacatttggaaaaatgtTAAAGCATCCCCGGAGCTAGAATAAGTTTTAAAATCACTGGGAGAACATTTTACAGTACAAGCGTCACCATCCGATTCcagtacactttaaaaatgtgagCACGATGTTTGACCCTGGATGTCCCCTGTAAAAACACTGTGAACAAACTGCCATCGCTACAGTAAATTCACTGGATGGGTAATTGGGGAGTTCATAGTGGACTTGTGTTGGTTTTAGATGTCCAGATATTTAGAACcatatttgcaatttaaacatgCACGCTTTGATACCATAAAACAGTGGTTTTCAANNNNGTGGAAACGTGCCATAAGGCTGTAAATTAGGATAATATGAGTCAGTTAGGTGTGGTCCTTTTTTATTCCGCAAAGGTCTCCAGATTAGCCTCgctaattaaagaaataaagatcTGTGGGGAAGGTGATGTTATTCATCTGGATTCACTGGTCATGAGAATTGCTTCGTCTGGCTTGAACAAGGTAGCCCTTTGATTTTATGATGCCTCTGCTTTTGACAATGACTGAGTAGCGTAGGACCCACTCCAGGAACCACTCTGTGACCAGCGGCTCCCCAATGCTGTCCTGCACAGCCTCCTGGAATCCGCTTGCAGTCATCTTTGGGATCATTGTGGGTCAGCAGCTGGATATCACACTCCTTGGCAAATGCAGTCAGGTCTGGAGGCATCACACAGCAGGAGGCCAGGTTCACCTGATTACTGCTGGGCTTTATCTGAACACAAAGGAGGATACATATTATTGCACAGAATATACATTTCTGCACCTTGAAAAACTGATTTGAATAATCTACAGGTTGGCACATTTCACAACCTGAAaggccaatgaaaaaacaaaaatcaccttTTCTCTGCTGACTGCACTGCATAAAATGATGCAAGCGAGTGATCATTTTACAAGAGACATGATTGGAAGAACCCACCTTTCCACCTAAGCGGTAGATCCTTTCAATGCAAGCCCTGATAAAGACACCAGGAGTATAGTTTTGATAGCCACCTTGGCTCTGGTAAACCTCTGATCGTTACCTGCGCCCACAAGTACAGCTGTTCCAGTAGAGCTTTATCCAGATCGGAGGTGCCGATGGCTGTGACCTTGTGGCTCTGGACCAGGCTTTCAAGCTCCTTCCAGAGAGGCTGCAGGTGACCCAGGGCTAGGCCCTCTCCCTCAGGCAGCAGGGGGGGGGCAATGATCACAGAGTCCAGCATGGACACCCCCAGGCCTGAACATGCTGCCAACatccaataaaatacaaatcaatcaaGCTCTCCTGTGAACATGGGATGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179589 lncRNA upstream 166214 179387 ~ 269208 (+) True G142776
TU179582 lncRNA upstream 312900 116507 ~ 122522 (+) False AMCG00004749
TU179547 lncRNA upstream 325029 109314 ~ 110393 (+) True G142737
TU179699 lncRNA downstream 127162 566383 ~ 570143 (+) True G142847
TU179740 lncRNA downstream 228736 667957 ~ 701758 (+) True G142881
TU179774 lncRNA downstream 349817 789038 ~ 792943 (+) True G142910
TU179830 lncRNA downstream 850488 1289709 ~ 1289985 (+) True G142958
TU179850 lncRNA downstream 972736 1411957 ~ 1412207 (+) True G142973
AMCG00004746 mRNA upstream 297169 134381 ~ 138253 (+) True AMCG00004746
AMCG00004749 mRNA upstream 312457 116491 ~ 122965 (+) True AMCG00004749
AMCG00004747 mRNA upstream 326219 48855 ~ 109203 (+) True AMCG00004747
AMCG00004748 mRNA upstream 404737 20381 ~ 30685 (+) True AMCG00004748
AMCG00004745 mRNA upstream 427194 5996 ~ 8228 (+) True AMCG00004745
AMCG00004759 mRNA downstream 40625 479846 ~ 507826 (+) True AMCG00004759
AMCG00004757 mRNA downstream 100554 539775 ~ 557281 (+) True AMCG00004757
AMCG00004758 mRNA downstream 211481 650702 ~ 659789 (+) True AMCG00004758
AMCG00004774 mRNA downstream 967778 1406999 ~ 1407247 (+) True AMCG00004774
AMCG00004776 mRNA downstream 990297 1429518 ~ 1431810 (+) True AMCG00004776
TU179968 other downstream 2001320 2440541 ~ 2520689 (+) False G143075
TU179967 other downstream 2109366 2548587 ~ 2559080 (+) True G143075
TU180082 other downstream 2683860 3123081 ~ 3124482 (+) True AMCG00004788
TU180081 other downstream 2684002 3123223 ~ 3124482 (+) False AMCG00004788
TU180140 other downstream 2938594 3377815 ~ 3395158 (+) True AMCG00004793

Expression Profile