RNA id: TU179754


Basic Information

Item Value
RNA id TU179754
length 244
lncRNA type inter_gene
GC content 0.57
exon number 2
gene id G142891
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 732484 ~ 732959 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

accaactactcgactcagctgctcgtccagtcactggtcctctcccacctggactactgcaactccctcctggccggcctgcctgcatccactacccgcccactccagctcatccagaactctgcagctcgtctgagcctactccttctcatccctggcccctaaatggtggaacgacctgcccaccgaagtcaaaacggcagaatccttgacctcattctggcgcttactcaagacacatctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179753 lncRNA downstream 27468 704290 ~ 705016 (-) True G142890
TU179656 lncRNA downstream 380857 307116 ~ 351627 (-) True G142828
TU179579 lncRNA downstream 621992 109264 ~ 110492 (-) True G142766
TU179577 lncRNA downstream 623273 105040 ~ 109211 (-) True G142765
TU179766 lncRNA upstream 47459 780418 ~ 782340 (-) True G142902
TU179784 lncRNA upstream 56143 789102 ~ 792949 (-) True G142920
TU179825 lncRNA upstream 437054 1170013 ~ 1170516 (-) True G142953
TU179831 lncRNA upstream 556705 1289664 ~ 1289985 (-) True G142959
TU179843 lncRNA upstream 646921 1379880 ~ 1380879 (-) True G142967
AMCG00004760 mRNA downstream 44033 677866 ~ 688451 (-) True AMCG00004760
AMCG00004762 mRNA downstream 58609 663525 ~ 673875 (-) True AMCG00004762
AMCG00004763 mRNA downstream 85873 644608 ~ 646611 (-) False AMCG00004763
AMCG00004761 mRNA downstream 148039 560125 ~ 584445 (-) True AMCG00004761
AMCG00004753 mRNA downstream 287005 437974 ~ 445479 (-) True AMCG00004753
AMCG00004765 mRNA upstream 60070 793029 ~ 799872 (-) True AMCG00004765
AMCG00004764 mRNA upstream 100932 833891 ~ 835155 (-) True AMCG00004764
AMCG00004766 mRNA upstream 103283 836242 ~ 858506 (-) True AMCG00004766
AMCG00004767 mRNA upstream 140917 873876 ~ 945686 (-) True AMCG00004767
AMCG00004770 mRNA upstream 267577 1000536 ~ 1001328 (-) True AMCG00004770
TU179730 other downstream 86105 644004 ~ 646379 (-) True AMCG00004763
TU179586 other downstream 601781 127778 ~ 130703 (-) True G142773
TU179583 other downstream 609957 119695 ~ 122527 (-) True G142770
TU180047 other upstream 1976595 2709554 ~ 2710004 (-) True G143145
TU180095 other upstream 2405898 3138857 ~ 3160673 (-) False AMCG00004790
TU180096 other upstream 2405898 3138857 ~ 3200167 (-) False AMCG00004790
TU180357 other upstream 3380788 4113747 ~ 4116414 (-) False AMCG00004819
TU180667 other upstream 5003850 5736809 ~ 5783184 (-) True G143659

Expression Profile