RNA id: TU179766


Basic Information

Item Value
RNA id TU179766
length 1815
lncRNA type inter_gene
GC content 0.49
exon number 3
gene id G142902
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 780418 ~ 782340 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAACAATAGCCTTAACCCCCTCCCCATGTCAGCAATAAGGCAACTCCGGTCTCTAAAGTCCCAGACCAAGAGCCTCTGTAACCTTACCTTACTTTCTCTAAGATGGCCATTCCACAACCCACCCCAGGTAAGTATTTGTTTGTTCAGAAGGTTTTTCAAACATCTTAACAAAGGGGATAAtggaattatttgtattgtcaattcaactaattgtttttatatatttttactgtccctaaatgtatttcttatgtattgattgtattttcaCTGTGATGATGTCATGCATTTAATACAGTGCCTCTAGAAGACAATGCATGTTAGTGACTGACAAACCATGTAAGAAACCTTGGATAATGgttaaatactttaattataacaataacactaataataatttccacCCAAGACAGTGAGACTtagagaaactcttcccacactgggcacaagGGAACGCTTTCCTGTATGATTGCAGGGGTGTCTGTTGACATTATATGCATCAGAGAAGCACTGGGCACAGTGGAACACTTTCCTGTGTGAATCCGCTGGTGAGCATTGAGATTAGAGGCATAAGTGAACCTTTtcccacactgcacacagctgtatggtctctctcctgtgtgactGCGCTGGTGTGCCTTGAAATTTGATGCATACGcaaagctcttcccacactgcacacagcagtatggtttctctcctgtgtgactGCGCTGGTGTGCGTTGAGATTAGATGCATAaatgaagctcttcccacactggacacagcagtatggtctttctcctgtgtgaatgcgcttgTGTTTGTTGAGATTAGATGCATTCGAGAAcctcttcccacactggacacagcagaacggtctctctcctgtgtgagtgtgctggtgtgtgatgagatgtgctgcctgacagaaactcttcccacactgggcacagtgGAATGATTTCACTCCTGTGTGAGTGCTGTGCTGCCTAATAAGTGCTGATGGCCCTGTGAAGTCCTTCCCACTCTGGGGCTGGTGATGGGGACGCTGTTTTCCACGCCGCAGTGGTGAGGAGGGGGAGCTGGATGAGCTAGGTAGTCTAGGGAGTCTGGGACGTAGTTGTCTGCACTGTGACGATGGGCTCTCCCaactcactgcactgtcactcccCCCACTGAGCCCTGTCTTCAAGGCAGCAGATTGtgggtcacactgtccagctacaggtAGCTCAGGCCCCAGGccacactgtccagctacagGTAGCTCAGGCCCcaggtcacactgtccagctacaggtAGCTCAGGCCCCAGGccacactgtccagctacagggagctcaggccccaggtcacactgtccagctacagggagctcaggccccagGTCACAGGCGCTGTCTGCAATATTCTCAATTTTGAGATTACTGAGTGCGTCTCTGAAGACAGTCTGTGTTCTCGGCTCCACTGCATAAACAGATTCCAGTGTCTCgtcctctgttttgatgtgatcAGACACCAGACTGGGTCCACACTGAGTTCTGGTAGAGCCCGCCAACTCAGggttgttgtttattaaattTGGCATGACCATTGACCCTGCTGTATCAGATCCCAGTGCCCGCAGTCCCTGTGTTGACCCTTCAGTGTGTGGCTCTGCCATATGGCCAGACTCCTGTCCCGTGAGTTTCTCTTCGCTAGGTCTGCTCTTGGACTGCTCAGACAGCCACTGGTTGCCTTCAGTAGCTGTGGGCTCTGGGTCCTGCTTCAGACTGGAGTCCCACTCCTGCTCACAGGACTGCTGTTCAACAGGAGCCCTTTCTCCAGAGTCA

Function

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179754 lncRNA downstream 47459 732484 ~ 732959 (-) True G142891
TU179753 lncRNA downstream 75402 704290 ~ 705016 (-) True G142890
TU179656 lncRNA downstream 428791 307116 ~ 351627 (-) True G142828
TU179579 lncRNA downstream 669926 109264 ~ 110492 (-) True G142766
TU179577 lncRNA downstream 671207 105040 ~ 109211 (-) True G142765
TU179784 lncRNA upstream 6762 789102 ~ 792949 (-) True G142920
TU179825 lncRNA upstream 387673 1170013 ~ 1170516 (-) True G142953
TU179831 lncRNA upstream 507324 1289664 ~ 1289985 (-) True G142959
TU179843 lncRNA upstream 597540 1379880 ~ 1380879 (-) True G142967
TU179849 lncRNA upstream 604083 1386423 ~ 1386687 (-) True G142972
AMCG00004760 mRNA downstream 91967 677866 ~ 688451 (-) True AMCG00004760
AMCG00004762 mRNA downstream 106543 663525 ~ 673875 (-) True AMCG00004762
AMCG00004763 mRNA downstream 133807 644608 ~ 646611 (-) False AMCG00004763
AMCG00004761 mRNA downstream 195973 560125 ~ 584445 (-) True AMCG00004761
AMCG00004753 mRNA downstream 334939 437974 ~ 445479 (-) True AMCG00004753
AMCG00004765 mRNA upstream 10689 793029 ~ 799872 (-) True AMCG00004765
AMCG00004764 mRNA upstream 51551 833891 ~ 835155 (-) True AMCG00004764
AMCG00004766 mRNA upstream 53902 836242 ~ 858506 (-) True AMCG00004766
AMCG00004767 mRNA upstream 91536 873876 ~ 945686 (-) True AMCG00004767
AMCG00004770 mRNA upstream 218196 1000536 ~ 1001328 (-) True AMCG00004770
TU179730 other downstream 134039 644004 ~ 646379 (-) True AMCG00004763
TU179586 other downstream 649715 127778 ~ 130703 (-) True G142773
TU179583 other downstream 657891 119695 ~ 122527 (-) True G142770
TU180047 other upstream 1927214 2709554 ~ 2710004 (-) True G143145
TU180095 other upstream 2356517 3138857 ~ 3160673 (-) False AMCG00004790
TU180096 other upstream 2356517 3138857 ~ 3200167 (-) False AMCG00004790
TU180357 other upstream 3331407 4113747 ~ 4116414 (-) False AMCG00004819
TU180667 other upstream 4954469 5736809 ~ 5783184 (-) True G143659

Expression Profile