RNA id: TU179774


Basic Information

Item Value
RNA id TU179774
length 3906
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G142910
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 789038 ~ 792943 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

acaaaaaatatatattttacaataattaaaaaaaaaaatactgatagTGTTAATTTTGTTAACATCTGCCATTCATTTAAATCCCTGTTAAAATTCACATATTTACAATTAAGAAGGTGTTTAGTTTTCATTGCACTAGTagaactgaagaaaaaagtGGCCTTTGGTATAAATGCTTACGTAGTGTTTCTTCagtacagtttaaaacaaacaagaaaaagagtTGCACGTGATGCAGTTGTTAcagaaaggaaataataaataaacagtaagtCGCTGatcttgtatataaaaaataaaaaaaaacatggacatGTTTGATGCACAAACACCACTACCATCCTGATTGCCTTGTAAAAGCATTTGATTTGGTGAATAAACTGACAGGATCATCGACAATACAAATGATTAGGTGGTACGTTTCATACACCCTGGTAACCCAAACTATTGGACTTAAAAACAAGGAAACGACGTCCAATTTATTTGAGATGAAAGAACTGTAGTTTTGAATGATCTCTGCAATAAACAGTAATTAAGATGTTGCTCTTGTAACTGTTGCTGCTTATAGTATTTAACAGAACAACTCGCCTCCACTTTAGATTCCATTGGACTCTACttgaaattagaaaaacaagacCGGGTCAAACTGTCCCACAGCTATGATGTGTGAAACAGCAGGAGACCAACATCTGGTGTGCAATTCCTTCATCATACTCGCGATACGAACAAGTGGAACGAAAACCAACCGTCCAACCAAAAATGGCCCACAGGATGTTTGTGTCAGTTCTGCTCTACAGTGTTTCGTGTAGTTTTGCTTCTGTACAAACATGTCAAGGGGCAGTTTAGTACAGGGGCTGGGTAGGGAGAAGGGACACAATCCAGAGCCCCACATTCTCACCGAGAGCAAACGCATTTTTTTGAGAAGTGGGTCTGCTTGTGCTACACTGAACTGGctagtaaaacatttaaagttcaTCAGTGATATTTAGGCAGTGCTTTTCTGATGGATGTCCACATCAGTTGGGCTATGAAATGTCATCCGCATCACAGAAGGTGAGTGATAATCTCTCATAGTTCTCCAACACCAACTACCAGAGTTTTTAACAGGGCTAAATTTGGTGTAGCCATGTCACCTGACAACGTTTCATAATGAAAACtctagagaaaaaaaaacaaaaaacgaaaaagTATATACAGAACATGATTATAACTATCTTGGACACAGTAGTGCACAATCCATGAAATGGGTTTTACAAAAGGCACCATGAATCGGCTAGCTTGCCTCCAGTAGTTAAATGGCCTTCGTTCTCTACAGATCTTGCAATGAAACGCATCATGGTTAGGTGGGATATTGCAGATTGTCACCAGATATAGCAACCAAAATGGGTCTCCAACACACAGGCTGACAAAATGACTCGGGGGCCCCCTTTCACACTAGCACACTGAACTGGGTAACAACCCACCTTGTAGCCAGCCGGGTTCTGATTTTGGTTAGTGTGACGTACACTGGTAGAACGCAGGTTCACGCGGGCAGATCAGGCGTAACCCACCTCGGGAGGTGGGCCAGCTAGCAATGACCCACGTAGAGCAAGATATGGCATACTTTTCCGCCAGTGACCATAGATCTAATCCACTTTGCTGAAACTGTAGTGTGAGAGCGCTGGACTGACCCCCTCCCCTCCGTACTAGAACCTGGGTAGGGTCGACCTGGGAAGAGGTAGCTAGTGTGAGAGGGGCTTTGGACTCATGAAGAGATCACAGTACGAGGGAGAGGCGTTCAAGCCCCCAGTGGTATTTTTGAAAGCCATATCGCAGGATGTGAGTTGAGCAGATTCtctttaaatgtagttttaatggaaaaaaaagatgaccaatttaaatttgacaattgATAAGATGAACAGATCTCAGATTTGTACCTATTTTCCATTCTAGTTTGACATATTTTAAGGCAACAGGTCAACTGATACAAAGTGTTCAAACCGTTGGGTTCAAGGGCCTTCACGGTGTGGTCAGGGCTTGGTTCAGAATGGGTTTTTACCATTTCAATTTCAGCATGCACACTGAAGCAGAAATTGAGGACTTTCTTTAAGGCATAGTCCTTCTAGATTCTACATGTTGGACAagggaataaaaatataaattaattaacagtgaGGATTAGAGGGATCTATCGTCAAAATGTGGCACCAAAAAATATTTCCTGCAATAAATTGTTGTGCGAGTGTGCGTTAACTGCGCTCGTCTAGAAAGTAAATCAACGCAAAACAGCAGAGACAAGAGCACTGCATACCTGGTTGTGGTTGTCACATTGTTTAAACAGCTGGATAAAACTGGGAGATTGGGACCCTTTTCCGAATTATATGAATGGAATTGAACAGTAATCTGGAGGAATTCAATATGAACTCATGAACACAAAATAGCAATCTTGCAAGTCATGCTTTCATTTGTTGTTGGCGGGATTTATTACGCATTCACTGCACTGGTGTGTATGAAGATGGTTCTGCattttgattgaaaaaaaaaaaacatctgaagctGATGGCATGTTCTGGAGAAGATGCATTTAGAGGCTGTTGATTACTTTTTTCACTGATTTATACAGTTTGtattcaagttttgttttttaaataggtaATGACTGAACGGATTACATTTCAGTTCTCCATGGTGTCAGAAATTGAAAGGCAGTGCAGACgtttaaaatcaataaagagGATTATGTTTTTGATGGGGATGTGTCTTAATTAAGAAACCAAACGGAATTATTCAAGATTAATGGAGATGGTtcaccaaacaaataaaaaaaaaacagcacacttTTGTCTCAACCTTCTTTTTTCAGTGAAGAAAcggtttgcttttaaaatagatgAATACTCCCTCGTCTTCACCTTTATTCTGAATGTCTGTGCTtcaattcacaataaaaatacaactggaagttaaatatttgtaaGGGACCTCATGATAGAAGTCAGATCTGCTACGTTGGAGTTCTTTAAGATGCAAAGTTCtacaaaaaagggaaatggCATCTGATGTTGAGAGTACTGTACCTTCGATCATCACAAAGCTGATCCTGCCACCATAATGATAAACTCAACAAACCTTCTCTAACGTTTCAACAATTACTTTTCAGACGTGCACAGAACTGCTCTGGGTAAGTGTGCATGGCAGCCTAGGCCCCTGATGTGAATGTTACGCATTGCTGGGCAATCAACATGGTCTTCAGTGTGACCCCTAGTGCTGCACAGGTCTGCTCAAGCAATGCTGTGCCACGCTGACATTCAGCCGTTGCAGTCGTTAGTTTCTCAAGTGCAAATAAAACGTTGCAAGCAGTGATTTTATGGAGGGAGAGATATTAAACAGGCTTGTTTAAGATTCCCCGTGTTGCGATTTCATTATGTGAAttctaaacattaaaaaaaatgtcaggaaATGGAAAGTGTTCGAACGACGACAACTGGGTAGTTTCGCTATAATGCACCAGCAAACCTGCTTAATTTGTTAGAGTTTGTTAGGGGAAGCACTTCAGTACTGCAGCTTCTACCAGTTAAATGAGTAAAGAGGCCTGAATAATATGATCCATGTTACAATGACACACACTGTGCCCTGCACCATGGTCTCCAAACTCTACTTGGTTGTGTCCAAACTGACAAGATGGCCGGCAATCTCTCGCACAAGCCCCAATCCCCAAACCCCCCCACAATGGCAGAAAGCGATCAGTCTTGGCTTTGGCGATTGCAGGCGCATCCAGTCACTTCAGAAACAACACAAGCGCTCCTGTAGCCACTTGGGGCCAGATCAGCAACAAGTGTTCCCACGGATGTTTGAAGACTGTAAACAATGTGATCAATGTAGTGATTTTCTGAGGTACTGCGCGATATCCCATTCCCCCACTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179740 lncRNA upstream 87280 667957 ~ 701758 (+) True G142881
TU179699 lncRNA upstream 218895 566383 ~ 570143 (+) True G142847
TU179669 lncRNA upstream 349817 435422 ~ 439221 (+) True G142835
TU179589 lncRNA upstream 519830 179387 ~ 269208 (+) True G142776
TU179582 lncRNA upstream 666516 116507 ~ 122522 (+) False AMCG00004749
TU179830 lncRNA downstream 496766 1289709 ~ 1289985 (+) True G142958
TU179850 lncRNA downstream 619014 1411957 ~ 1412207 (+) True G142973
TU179912 lncRNA downstream 1466786 2259729 ~ 2308874 (+) True G143029
TU179964 lncRNA downstream 1766374 2559317 ~ 2562389 (+) True G143074
TU179965 lncRNA downstream 1766374 2559317 ~ 2562389 (+) False G143074
AMCG00004758 mRNA upstream 129249 650702 ~ 659789 (+) True AMCG00004758
AMCG00004757 mRNA upstream 231757 539775 ~ 557281 (+) True AMCG00004757
AMCG00004759 mRNA upstream 281212 479846 ~ 507826 (+) True AMCG00004759
AMCG00004746 mRNA upstream 650785 134381 ~ 138253 (+) True AMCG00004746
AMCG00004749 mRNA upstream 666073 116491 ~ 122965 (+) True AMCG00004749
AMCG00004774 mRNA downstream 614056 1406999 ~ 1407247 (+) True AMCG00004774
AMCG00004776 mRNA downstream 636575 1429518 ~ 1431810 (+) True AMCG00004776
AMCG00004775 mRNA downstream 642320 1435263 ~ 1457250 (+) True AMCG00004775
AMCG00004782 mRNA downstream 1697511 2490454 ~ 2490690 (+) True AMCG00004782
AMCG00004783 mRNA downstream 1755664 2548607 ~ 2558673 (+) True AMCG00004783
TU179968 other downstream 1647598 2440541 ~ 2520689 (+) False G143075
TU179967 other downstream 1755644 2548587 ~ 2559080 (+) True G143075
TU180082 other downstream 2330138 3123081 ~ 3124482 (+) True AMCG00004788
TU180081 other downstream 2330280 3123223 ~ 3124482 (+) False AMCG00004788
TU180140 other downstream 2584872 3377815 ~ 3395158 (+) True AMCG00004793

Expression Profile