RNA id: TU179784


Basic Information

Item Value
RNA id TU179784
length 3848
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G142920
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 789102 ~ 792949 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGGAGGCAGTGGGGGAATGGGATATCGCGCAGTACCTCAGAAAATCACTACATTGATCACATTGTTTACAGTCTTCAAACATCCGTGGGAACACTTGTTGCTGATCTGGCCCCAAGTGGCTACAGGAGCGCTTGTGTTGTTTCTGAAGTGACTGGATGCGCCTGCAATCGCCAAAGCCAAGACTGATCGCTTTCTGCCATTGTGGGGGGGTTTGGGGATTGGGGCTTGTGCGAGAGATTGCCGGCCATCTTGTCAGTTTGGACACAACCAAGTAGAGTTTGGAGACCATGGTGCAGGGCACAGTGTGTGTCATTGTAACATGGATCATATTATTCAGGCCTCTTTACTCATTTAACTGGTAGAAGCTGCAGTACTGAAGTGCTTCCCCTAACAAACTCTAACAAATTAAGCAGGTTTGCTGGTGCATTATAGCGAAACTACCCAGTTGTCGTCGTTCGAACACTTTCCATttcctgacattttttttaatgtttagaaTTCACATAATGAAATCGCAACACGGGGAATCTTAAACAAGCCTGTTTAATATCTCTCCCTCCATAAAATCACTGCTTGCAACGTTTTATTTGCACTTGAGAAACTAACGACTGCAACGGCTGAATGTCAGCGTGGCACAGCATTGCTTGAGCAGACCTGTGCAGCACTAGGGGTCACACTGAAGACCATGTTGATTGCCCAGCAATGCGTAACATTCACATCAGGGGCCTAGGCTGCCATGCACACTTACCCAGAGCAGTTCTGTGCACGTCTGAAAAGTAATTGTTGAAACGTTAGAGAAGGTTTGTTGAGTTTATCATTATGGTGGCAGGATCAGCTTTGTGATGATCGAAGGTACAGTACTCTCAACATCAGATGccatttcccttttttgtaGAACTTTGCATCTTAAAGAACTCCAACGTAGCAGATCTGACTTCTATCATGAGGTCCCttacaaatatttaacttccagttgtatttttattgtgaattgaAGCACAGACATTCAGAATAAAGGTGAAGACGAGGGAGTATTcatctattttaaaagcaaaccgTTTCTTCACTGAAAAAAGAAGGTTGAGACAAaagtgtgctgttttttttttatttgtttggtgaACCATCTCCATTAATCTTGAATAATTCCGTTTGGTTTCTTAATTAAGACACATCCCCATCAAAAACATAATCctctttattgattttaaacGTCTGCACTGCCTTTCAATTTCTGACACCATGGAGAACTGAAATGTAATCCGTTCAGTCATtacctatttaaaaaacaaaacttgaataCAAACTGTATAAATCAGTGAAAAAAGTAATCAACAGCCTCTAAATGCATCTTCTCCAGAACATGCCATCagcttcagatgttttttttttttcaatcaaaatGCAGAACCATCTTCATACACACCAGTGCAGTGAATGCGTAATAAATCCCGCCAACAACAAATGAAAGCATGACTTGCAAGATTGCTATTTTGTGTTCATGAGTTCATATTGAATTCCTCCAGATTACTGTTCAATTCCATTCATATAATTCGGAAAAGGGTCCCAATCTCCCAGTTTTATCCAGCTGTTTAAACAATGTGACAACCACAACCAGGTATGCAGTGCTCTTGTCTCTGCTGTTTTGCGTTGATTTACTTTCTAGACGAGCGCAGTTAACGCACACTCGCACAACAATTTATTGCAGGAAATATTTTTTGGTGCCACATTTTGACGATAGATCCCTCTAATCCtcactgttaattaatttatatttttattccctTGTCCAACATGTAGAATCTAGAAGGACTATGCCTTAAAGAAAGTCCTCAATTTCTGCTTCAGTGTGCATGCTGAAATTGAAATGGTAAAAACCCATTCTGAACCAAGCCCTGACCACACCGTGAAGGCCCTTGAACCCAACGGTTTGAACACTTTGTATCAGTTGACCTGTTGCCTTAAAATATGTCAAACTAGAATGGAAAATAGGTACAAATCTGAGATCTGTTCATCTTATcaattgtcaaatttaaattggtcatcttttttttccattaaaactacatttaaagaGAATCTGCTCAACTCACATCCTGCGATATGGCTTTCAAAAATACCACTGGGGGCTTGAACGCCTCTCCCTCGTACTGTGATCTCTTCATGAGTCCAAAGCCCCTCTCACACTAGCTACCTCTTCCCAGGTCGACCCTACCCAGGTTCTAGTACGGAGGGGAGGGGGTCAGTCCAGCGCTCTCACACTACAGTTTCAGCAAAGTGGATTAGATCTATGGTCACTGGCGGAAAAGTATGCCATATCTTGCTCTACGTGGGTCATTGCTAGCTGGCCCACCTCCCGAGGTGGGTTACGCCTGATCTGCCCGCGTGAACCTGCGTTCTACCAGTGTACGTCACACTAACCAAAATCAGAACCCGGCTGGCTACAAGGTGGGTTGTTACCCAGTTCAGTGTGCTAGTGTGAAAGGGGGCCCCCGAGTCATTTTGTCAGCCTGTGTGTTGGAGACCCATTTTGGTTGCTATATCTGGTGACAATCTGCAATATCCCACCTAACCATGATGCGTTTCATTGCAAGATCTGTAGAGAACGAAGGCCATTTAACTACTGGAGGCAAGCTAGCCGATTCATGGTGCCTTTTGTAAAACCCATTTCATGGATTGTGCACTACTGTGTCCAAGATAGTTATAATCATGTTCTGTATATActttttcgttttttgtttttttttctctagaGTTTTCATTATGAAACGTTGTCAGGTGACATGGCTACACCAAATTTAGCCCTGTTAAAAACTCTGGTAGTTGGTGTTGGAGAACTATGAGAGATTATCACTCACCTTCTGTGATGCGGATGACATTTCATAGCCCAACTGATGTGGACATCCATCAGAAAAGCACTGCCTAAATATCACTGAtgaactttaaatgttttactagCCAGTTCAGTGTAGCACAAGCAGACCCACTTCTCAAAAAAATGCGTTTGCTCTCGGTGAGAATGTGGGGCTCTGGATTGTGTCCCTTCTCCCTACCCAGCCCCTGTACTAAACTGCCCCTTGACATGTTTGTACAGAAGCAAAACTACACGAAACACTGTAGAGCAGAACTGACACAAACATCCTGTGGGCCATTTTTGGTTGGACGGTTGGTTTTCGTTCCACTTGTTCGTATCGCGAGTATGATGAAGGAATTGCACACCAGATGTTGGTCTCCTGCTGTTTCACACATCATAGCTGTGGGACAGTTTGACCCGgtcttgtttttctaatttcaaGTAGAGTCCAATGGAATCTAAAGTGGAGGCGAGTTGTTCTGTTAAATACTATAAGCAGCAACAGTTACAAGAGCAACATCTTAATTACTGTTTATTGCAGAGATCATTCAAAACTACAGTTCTTTCATCTCAAATAAATTGGACGTCGTTTCCTTGTTTTTAAGTCCAATAGTTTGGGTTACCAGGGTGTATGAAACGTACCACCTAATCATTTGTATTGTCGATGATCCTGTCAGTTTATTCACCAAATCAAATGCTTTTACAAGGCAATCAGGATGGTAGTGGTGTTTGTGCATCAAACatgtccatgtttttttttattttttatatacaagatCAGCGacttactgtttatttattatttcctttctgTAACAACTGCATCACGTGCAactctttttcttgtttgttttaaactgtactGAAGAAACACTACGTAAGCATTTATACCAAAGGCCacttttttcttcagttctACTAGTGCAATGAAAACTAAACACCTTCTTAATTGTAAATATGTGAATTTTAACAGGGATTTAAATGAATGGCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179766 lncRNA downstream 6762 780418 ~ 782340 (-) True G142902
TU179754 lncRNA downstream 56143 732484 ~ 732959 (-) True G142891
TU179753 lncRNA downstream 84086 704290 ~ 705016 (-) True G142890
TU179656 lncRNA downstream 437475 307116 ~ 351627 (-) True G142828
TU179579 lncRNA downstream 678610 109264 ~ 110492 (-) True G142766
TU179825 lncRNA upstream 377064 1170013 ~ 1170516 (-) True G142953
TU179831 lncRNA upstream 496715 1289664 ~ 1289985 (-) True G142959
TU179843 lncRNA upstream 586931 1379880 ~ 1380879 (-) True G142967
TU179849 lncRNA upstream 593474 1386423 ~ 1386687 (-) True G142972
TU179873 lncRNA upstream 734629 1527578 ~ 1527810 (-) True G142990
AMCG00004760 mRNA downstream 100651 677866 ~ 688451 (-) True AMCG00004760
AMCG00004762 mRNA downstream 115227 663525 ~ 673875 (-) True AMCG00004762
AMCG00004763 mRNA downstream 142491 644608 ~ 646611 (-) False AMCG00004763
AMCG00004761 mRNA downstream 204657 560125 ~ 584445 (-) True AMCG00004761
AMCG00004753 mRNA downstream 343623 437974 ~ 445479 (-) True AMCG00004753
AMCG00004765 mRNA upstream 80 793029 ~ 799872 (-) True AMCG00004765
AMCG00004764 mRNA upstream 40942 833891 ~ 835155 (-) True AMCG00004764
AMCG00004766 mRNA upstream 43293 836242 ~ 858506 (-) True AMCG00004766
AMCG00004767 mRNA upstream 80927 873876 ~ 945686 (-) True AMCG00004767
AMCG00004770 mRNA upstream 207587 1000536 ~ 1001328 (-) True AMCG00004770
TU179730 other downstream 142723 644004 ~ 646379 (-) True AMCG00004763
TU179586 other downstream 658399 127778 ~ 130703 (-) True G142773
TU179583 other downstream 666575 119695 ~ 122527 (-) True G142770
TU180047 other upstream 1916605 2709554 ~ 2710004 (-) True G143145
TU180095 other upstream 2345908 3138857 ~ 3160673 (-) False AMCG00004790
TU180096 other upstream 2345908 3138857 ~ 3200167 (-) False AMCG00004790
TU180357 other upstream 3320798 4113747 ~ 4116414 (-) False AMCG00004819
TU180667 other upstream 4943860 5736809 ~ 5783184 (-) True G143659

Expression Profile