RNA id: TU179825


Basic Information

Item Value
RNA id TU179825
length 504
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G142953
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 1170013 ~ 1170516 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgattttgtacgtttgcccactgacaaagaaatgatcagtctataattttaatggtaggtgtattttaacagtgagagacagaataacaaaaaaaaatccagaaaaacgcatttcaaaaaagttatgaattgatttgcatgttgatgagggaaataagtatttgaccccttcgacttagtacttggtggtaAAACCCTTGTTGGAAATCACAGAGGTCacacgtttcttgtagttggccaccaggtttgctcacatctcaggagggattttgtcccactcctctttacagatcctctccaagtcattaaggttttgaggctgacgtttggcaactcgaaccttcagttccctccacagattttctatgggattaaggtctggagactggctaggccactccaggaccttaatgtgcttcttcttgagccactcctttgttgccttggctgtgtgttttgggtcaatgtcatgctggaatacccatccacgacccattttcaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179784 lncRNA downstream 377064 789102 ~ 792949 (-) True G142920
TU179766 lncRNA downstream 387673 780418 ~ 782340 (-) True G142902
TU179754 lncRNA downstream 437054 732484 ~ 732959 (-) True G142891
TU179753 lncRNA downstream 464997 704290 ~ 705016 (-) True G142890
TU179656 lncRNA downstream 818386 307116 ~ 351627 (-) True G142828
TU179831 lncRNA upstream 119148 1289664 ~ 1289985 (-) True G142959
TU179843 lncRNA upstream 209364 1379880 ~ 1380879 (-) True G142967
TU179849 lncRNA upstream 215907 1386423 ~ 1386687 (-) True G142972
TU179873 lncRNA upstream 357062 1527578 ~ 1527810 (-) True G142990
TU179935 lncRNA upstream 724572 1895088 ~ 1924283 (-) True G143046
AMCG00004771 mRNA downstream 19723 1142360 ~ 1150290 (-) True AMCG00004771
AMCG00004772 mRNA downstream 61496 1074450 ~ 1108517 (-) True AMCG00004772
AMCG00004769 mRNA downstream 98319 1014344 ~ 1071694 (-) True AMCG00004769
AMCG00004770 mRNA downstream 168685 1000536 ~ 1001328 (-) True AMCG00004770
AMCG00004767 mRNA downstream 224327 873876 ~ 945686 (-) True AMCG00004767
AMCG00004768 mRNA upstream 6825 1177341 ~ 1177622 (-) True AMCG00004768
AMCG00004773 mRNA upstream 57609 1228125 ~ 1228583 (-) True AMCG00004773
AMCG00004779 mRNA upstream 349001 1519517 ~ 1520486 (-) True AMCG00004779
AMCG00004778 mRNA upstream 391269 1561785 ~ 1606266 (-) True AMCG00004778
AMCG00004777 mRNA upstream 520512 1691028 ~ 1718262 (-) True AMCG00004777
TU179730 other downstream 523634 644004 ~ 646379 (-) True AMCG00004763
TU179586 other downstream 1039310 127778 ~ 130703 (-) True G142773
TU179583 other downstream 1047486 119695 ~ 122527 (-) True G142770
TU180047 other upstream 1539038 2709554 ~ 2710004 (-) True G143145
TU180095 other upstream 1968341 3138857 ~ 3160673 (-) False AMCG00004790
TU180096 other upstream 1968341 3138857 ~ 3200167 (-) False AMCG00004790
TU180357 other upstream 2943231 4113747 ~ 4116414 (-) False AMCG00004819
TU180667 other upstream 4566293 5736809 ~ 5783184 (-) True G143659

Expression Profile