RNA id: TU179843


Basic Information

Item Value
RNA id TU179843
length 555
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G142967
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 1379880 ~ 1380879 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGAGACCTCCTGGAAATACCTGGTGCTGCAAGCTTTTTACGTCTCCTGGGTAACGTAATCGAAGCTCTTAATAGTCTCTTTCTGTCTGGAGGAGATATAATNNNNNNNTTGTACACATACCCGGCTTCTTTCAACACCCTTTGCTGCACTGGTATTTTTCccatcatttttctttttttttttttgttggaagTTCCGTCAATACCCACNNNNNNNNNNGAGACATCATGCAGCCAGGCCTCTTCGCTTGCGGCCACACCATCCTGAACGCGCCCGATCTCGTCAGATCTCGGAAGCTNNNNNNNNNNNNNNNTGGTCAGTACTTGGATAGGTGACCTCCTGGAAATACCAGGTGCTGCAAGCTTTTCACGTCTCCTGGGAAACTTCCTCGTAGCTCTTAATACTCTCTTTCAGTTTGGAGGAGATATAATTGAAGAATTTTACACGTACCCGGCTACTTTCAATACCCTTTGCTGCACTGTTATGTTTCcctccatttttctttttttgcaggAAATTCCGTCAATACCCGCCTGCCATTAAGAGACATCATGC

Function

GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04976 Bile secretion
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179831 lncRNA downstream 89895 1289664 ~ 1289985 (-) True G142959
TU179825 lncRNA downstream 209364 1170013 ~ 1170516 (-) True G142953
TU179784 lncRNA downstream 586931 789102 ~ 792949 (-) True G142920
TU179766 lncRNA downstream 597540 780418 ~ 782340 (-) True G142902
TU179754 lncRNA downstream 646921 732484 ~ 732959 (-) True G142891
TU179849 lncRNA upstream 5544 1386423 ~ 1386687 (-) True G142972
TU179873 lncRNA upstream 146699 1527578 ~ 1527810 (-) True G142990
TU179935 lncRNA upstream 514209 1895088 ~ 1924283 (-) True G143046
TU179952 lncRNA upstream 908700 2289579 ~ 2290140 (-) True G143062
TU179988 lncRNA upstream 1175975 2556854 ~ 2561991 (-) True G143095
AMCG00004773 mRNA downstream 151297 1228125 ~ 1228583 (-) True AMCG00004773
AMCG00004768 mRNA downstream 202258 1177341 ~ 1177622 (-) True AMCG00004768
AMCG00004771 mRNA downstream 229590 1142360 ~ 1150290 (-) True AMCG00004771
AMCG00004772 mRNA downstream 271363 1074450 ~ 1108517 (-) True AMCG00004772
AMCG00004769 mRNA downstream 308186 1014344 ~ 1071694 (-) True AMCG00004769
AMCG00004779 mRNA upstream 138638 1519517 ~ 1520486 (-) True AMCG00004779
AMCG00004778 mRNA upstream 180906 1561785 ~ 1606266 (-) True AMCG00004778
AMCG00004777 mRNA upstream 310149 1691028 ~ 1718262 (-) True AMCG00004777
AMCG00004780 mRNA upstream 515401 1896280 ~ 1912141 (-) True AMCG00004780
AMCG00004781 mRNA upstream 820332 2201211 ~ 2204495 (-) True AMCG00004781
TU179730 other downstream 733501 644004 ~ 646379 (-) True AMCG00004763
TU179586 other downstream 1249177 127778 ~ 130703 (-) True G142773
TU179583 other downstream 1257353 119695 ~ 122527 (-) True G142770
TU180047 other upstream 1328675 2709554 ~ 2710004 (-) True G143145
TU180095 other upstream 1757978 3138857 ~ 3160673 (-) False AMCG00004790
TU180096 other upstream 1757978 3138857 ~ 3200167 (-) False AMCG00004790
TU180357 other upstream 2732868 4113747 ~ 4116414 (-) False AMCG00004819
TU180667 other upstream 4355930 5736809 ~ 5783184 (-) True G143659

Expression Profile