RNA id: TU179849


Basic Information

Item Value
RNA id TU179849
length 265
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G142972
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 1386423 ~ 1386687 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGGTTTCCAcagtagttacttgaagacaaagtctttgaggaaagcagggccctgttcgttccaagggtcaagtttcttaagactcaaatagctatttaactgactgacactttcgtattcagtcgacttagtcaattgtccagctgtaaaactccactgatcaggtgggcacaggcgggcagcgcagtctgtaaagttctttatttaataaagtcctttaaaagaattcttcgtacggctcaatctccttctcccagtttaact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179843 lncRNA downstream 5544 1379880 ~ 1380879 (-) True G142967
TU179831 lncRNA downstream 96438 1289664 ~ 1289985 (-) True G142959
TU179825 lncRNA downstream 215907 1170013 ~ 1170516 (-) True G142953
TU179784 lncRNA downstream 593474 789102 ~ 792949 (-) True G142920
TU179766 lncRNA downstream 604083 780418 ~ 782340 (-) True G142902
TU179873 lncRNA upstream 140891 1527578 ~ 1527810 (-) True G142990
TU179935 lncRNA upstream 508401 1895088 ~ 1924283 (-) True G143046
TU179952 lncRNA upstream 902892 2289579 ~ 2290140 (-) True G143062
TU179988 lncRNA upstream 1170167 2556854 ~ 2561991 (-) True G143095
TU179998 lncRNA upstream 1253891 2640578 ~ 2640860 (-) True G143105
AMCG00004773 mRNA downstream 157840 1228125 ~ 1228583 (-) True AMCG00004773
AMCG00004768 mRNA downstream 208801 1177341 ~ 1177622 (-) True AMCG00004768
AMCG00004771 mRNA downstream 236133 1142360 ~ 1150290 (-) True AMCG00004771
AMCG00004772 mRNA downstream 277906 1074450 ~ 1108517 (-) True AMCG00004772
AMCG00004769 mRNA downstream 314729 1014344 ~ 1071694 (-) True AMCG00004769
AMCG00004779 mRNA upstream 132830 1519517 ~ 1520486 (-) True AMCG00004779
AMCG00004778 mRNA upstream 175098 1561785 ~ 1606266 (-) True AMCG00004778
AMCG00004777 mRNA upstream 304341 1691028 ~ 1718262 (-) True AMCG00004777
AMCG00004780 mRNA upstream 509593 1896280 ~ 1912141 (-) True AMCG00004780
AMCG00004781 mRNA upstream 814524 2201211 ~ 2204495 (-) True AMCG00004781
TU179730 other downstream 740044 644004 ~ 646379 (-) True AMCG00004763
TU179586 other downstream 1255720 127778 ~ 130703 (-) True G142773
TU179583 other downstream 1263896 119695 ~ 122527 (-) True G142770
TU180047 other upstream 1322867 2709554 ~ 2710004 (-) True G143145
TU180095 other upstream 1752170 3138857 ~ 3160673 (-) False AMCG00004790
TU180096 other upstream 1752170 3138857 ~ 3200167 (-) False AMCG00004790
TU180357 other upstream 2727060 4113747 ~ 4116414 (-) False AMCG00004819
TU180667 other upstream 4350122 5736809 ~ 5783184 (-) True G143659

Expression Profile