RNA id: TU179873


Basic Information

Item Value
RNA id TU179873
length 233
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G142990
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 1527578 ~ 1527810 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGTCCCTTTATCAGCCTCAGCATGCTTTGAGGTCGACTAATAGTGGCTTCCTCTGTATTCCGAGGGTGAGGCTCAGGAGGAAAGGAGAGgttgctttctgtgtttatgCTCTGCAGCTGTGGAACTTTCTCCCCGAGCATGTCAGAGGCTCACCTACAGTAGCTACTTTTAAATCTAGGCTTAagacttatttttataatttagctttttgattttatatattgttgttttt

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04640 Hematopoietic cell lineage
ko04660 T cell receptor signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179849 lncRNA downstream 140891 1386423 ~ 1386687 (-) True G142972
TU179843 lncRNA downstream 146699 1379880 ~ 1380879 (-) True G142967
TU179831 lncRNA downstream 237593 1289664 ~ 1289985 (-) True G142959
TU179825 lncRNA downstream 357062 1170013 ~ 1170516 (-) True G142953
TU179784 lncRNA downstream 734629 789102 ~ 792949 (-) True G142920
TU179935 lncRNA upstream 367278 1895088 ~ 1924283 (-) True G143046
TU179952 lncRNA upstream 761769 2289579 ~ 2290140 (-) True G143062
TU179988 lncRNA upstream 1029044 2556854 ~ 2561991 (-) True G143095
TU179998 lncRNA upstream 1112768 2640578 ~ 2640860 (-) True G143105
TU180044 lncRNA upstream 1153510 2681320 ~ 2681561 (-) True G143142
AMCG00004779 mRNA downstream 7092 1519517 ~ 1520486 (-) True AMCG00004779
AMCG00004773 mRNA downstream 298995 1228125 ~ 1228583 (-) True AMCG00004773
AMCG00004768 mRNA downstream 349956 1177341 ~ 1177622 (-) True AMCG00004768
AMCG00004771 mRNA downstream 377288 1142360 ~ 1150290 (-) True AMCG00004771
AMCG00004772 mRNA downstream 419061 1074450 ~ 1108517 (-) True AMCG00004772
AMCG00004778 mRNA upstream 33975 1561785 ~ 1606266 (-) True AMCG00004778
AMCG00004777 mRNA upstream 163218 1691028 ~ 1718262 (-) True AMCG00004777
AMCG00004780 mRNA upstream 368470 1896280 ~ 1912141 (-) True AMCG00004780
AMCG00004781 mRNA upstream 673401 2201211 ~ 2204495 (-) True AMCG00004781
AMCG00004785 mRNA upstream 1161436 2689246 ~ 2691272 (-) True AMCG00004785
TU179730 other downstream 881199 644004 ~ 646379 (-) True AMCG00004763
TU179586 other downstream 1396875 127778 ~ 130703 (-) True G142773
TU179583 other downstream 1405051 119695 ~ 122527 (-) True G142770
TU180047 other upstream 1181744 2709554 ~ 2710004 (-) True G143145
TU180095 other upstream 1611047 3138857 ~ 3160673 (-) False AMCG00004790
TU180096 other upstream 1611047 3138857 ~ 3200167 (-) False AMCG00004790
TU180357 other upstream 2585937 4113747 ~ 4116414 (-) False AMCG00004819
TU180667 other upstream 4208999 5736809 ~ 5783184 (-) True G143659

Expression Profile