RNA id: TU179935


Basic Information

Item Value
RNA id TU179935
length 371
lncRNA type sense_over
GC content 0.39
exon number 2
gene id G143046
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 1895088 ~ 1924283 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCAAAGGGAGGTTCCCTTTGTGTTTGTTAGGAGATGAGAGAGAGTTGTGTGTTTCTGACCTCTCTAAATTCTAGCCTACTTATAACCTCTATCCCTTTTGCATTATTGGTCTGCTGTCCTAAGTGAGGTGgttcttgccttttttttttttggagcctttttgttttgaggcctttttgggtttttttggtttgtgtgcctggggctttttgttatttttgtcttgGATTGCCTTTTTGGactttgcatacatttttgttcctgttaGAGTATTTGGGAAagatatttttgttctttcatgATTGGATTACAAAGTCATTCCTGGACCAGTCCTGGATCTTCGGCCTAACTCAAGGAGTGATAATGTTGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179873 lncRNA downstream 367278 1527578 ~ 1527810 (-) True G142990
TU179849 lncRNA downstream 508401 1386423 ~ 1386687 (-) True G142972
TU179843 lncRNA downstream 514209 1379880 ~ 1380879 (-) True G142967
TU179831 lncRNA downstream 605103 1289664 ~ 1289985 (-) True G142959
TU179825 lncRNA downstream 724572 1170013 ~ 1170516 (-) True G142953
TU179952 lncRNA upstream 365296 2289579 ~ 2290140 (-) True G143062
TU179988 lncRNA upstream 632571 2556854 ~ 2561991 (-) True G143095
TU179998 lncRNA upstream 716295 2640578 ~ 2640860 (-) True G143105
TU180044 lncRNA upstream 757037 2681320 ~ 2681561 (-) True G143142
TU180046 lncRNA upstream 767073 2691356 ~ 2691959 (-) True G143144
AMCG00004777 mRNA downstream 176826 1691028 ~ 1718262 (-) True AMCG00004777
AMCG00004778 mRNA downstream 288822 1561785 ~ 1606266 (-) True AMCG00004778
AMCG00004779 mRNA downstream 374602 1519517 ~ 1520486 (-) True AMCG00004779
AMCG00004773 mRNA downstream 666505 1228125 ~ 1228583 (-) True AMCG00004773
AMCG00004768 mRNA downstream 717466 1177341 ~ 1177622 (-) True AMCG00004768
AMCG00004781 mRNA upstream 276928 2201211 ~ 2204495 (-) True AMCG00004781
AMCG00004785 mRNA upstream 764963 2689246 ~ 2691272 (-) True AMCG00004785
AMCG00004787 mRNA upstream 769742 2694025 ~ 2993047 (-) True AMCG00004787
AMCG00004789 mRNA upstream 1112899 3037182 ~ 3047714 (-) True AMCG00004789
AMCG00004790 mRNA upstream 1195946 3120229 ~ 3217229 (-) True AMCG00004790
TU179730 other downstream 1248709 644004 ~ 646379 (-) True AMCG00004763
TU179586 other downstream 1764385 127778 ~ 130703 (-) True G142773
TU179583 other downstream 1772561 119695 ~ 122527 (-) True G142770
TU180047 other upstream 785271 2709554 ~ 2710004 (-) True G143145
TU180095 other upstream 1214574 3138857 ~ 3160673 (-) False AMCG00004790
TU180096 other upstream 1214574 3138857 ~ 3200167 (-) False AMCG00004790
TU180357 other upstream 2189464 4113747 ~ 4116414 (-) False AMCG00004819
TU180667 other upstream 3812526 5736809 ~ 5783184 (-) True G143659

Expression Profile