RNA id: TU179968


Basic Information

Item Value
RNA id TU179968
length 961
RNA type TUCP
GC content 0.48
exon number 4
gene id G143075
representative False

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 2440541 ~ 2559080 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGCTCCTCCGTCCCCTCACCAGACGAACCAATCAGATACCACCCCAGACTGACAGACTTTAGATATCCATAAATCGGAGTTAAAGAAAGAGATGCTTCCACTAGCAAAGCGGTTTCAGTGAACgttcttcatttttgttttgttttttttattttcccctctacTCTGTCTTTCCTACAGTCCAGGCTTTAATAGCGTAGAGCTTTTGCTACCACCCACCGCTGAACCTCCGAAGAGAGgcatattctctctctctctctctctctctctctctctctctctctctctcctcacaaGGCTTGTCCTTGTCCTTGGGATCTCCGAGACTGTCCCCCTTTTTCTCTTCCCCACGTTTCATTCGCGAAAGGCAACATTTCGAATCCCCCGCTTAcagacatttttacaatttcttTGTCAACCCCGTACAACAAGAATGGTCATGGGATCGACAGAGACACAGTGGCGTCAGGCAGAGCTCCCACAACTGCAGGGCTGGGCAGAGAAAGGAATGCTGACACAGCCAAAGATGATAATCAGCAACATGGACCCTCAGGTGACGAATGGGCCGAGCGCCACTACGGCTAACGGGCCTTCCAGTAACAGTCGGAGCTGCCCCTCCCCTATGCAGACTGGCAGTGTCACTGACGACAGCAAGACCAACCTCATTGTCAACTACCTGCCCCAGAACATGACCCAAGAGGAGTTCCGCAGTCTGTTCGGCAGCATCGGAGAGATCGAATCCTGCAAGCTGGTCCGAGACAAGATCACAGgacAGAGTTTAGGTTATGGCTTTGTAAACTACATCGATCCCAAGGATGCAGAAAAAGCCATCAACACTTTAAATGGACTCAGACTTCAGACCAAAACTATAAAGGTAAGAGAGaccattatatattttctctggATAAAAAGCTTTAAACACAACTCATTTAACCTGTTAGTACACTCAGGTATAGCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179912 lncRNA upstream 131667 2259729 ~ 2308874 (+) True G143029
TU179850 lncRNA upstream 1028334 1411957 ~ 1412207 (+) True G142973
TU179830 lncRNA upstream 1150556 1289709 ~ 1289985 (+) True G142958
TU179774 lncRNA upstream 1647598 789038 ~ 792943 (+) True G142910
TU179740 lncRNA upstream 1738783 667957 ~ 701758 (+) True G142881
TU179964 lncRNA downstream 38628 2559317 ~ 2562389 (+) True G143074
TU179965 lncRNA downstream 38628 2559317 ~ 2562389 (+) False G143074
TU180000 lncRNA downstream 160615 2681304 ~ 2681548 (+) True G143107
TU180005 lncRNA downstream 199609 2720298 ~ 2761630 (+) True G143109
TU180072 lncRNA downstream 563683 3084372 ~ 3086394 (+) True G143166
AMCG00004775 mRNA upstream 983291 1435263 ~ 1457250 (+) True AMCG00004775
AMCG00004776 mRNA upstream 1008731 1429518 ~ 1431810 (+) True AMCG00004776
AMCG00004774 mRNA upstream 1033294 1406999 ~ 1407247 (+) True AMCG00004774
AMCG00004758 mRNA upstream 1780752 650702 ~ 659789 (+) True AMCG00004758
AMCG00004757 mRNA upstream 1883260 539775 ~ 557281 (+) True AMCG00004757
AMCG00004783 mRNA downstream 27918 2548607 ~ 2558673 (+) True AMCG00004783
AMCG00004784 mRNA downstream 431622 2952311 ~ 2952624 (+) True AMCG00004784
AMCG00004786 mRNA downstream 477317 2998006 ~ 3002925 (+) True AMCG00004786
AMCG00004788 mRNA downstream 602578 3123267 ~ 3160209 (+) False AMCG00004788
AMCG00004791 mRNA downstream 731281 3251970 ~ 3262480 (+) True AMCG00004791
TU179967 other downstream 27898 2548587 ~ 2559080 (+) True G143075
TU180082 other downstream 602392 3123081 ~ 3124482 (+) True AMCG00004788
TU180081 other downstream 602534 3123223 ~ 3124482 (+) False AMCG00004788
TU180140 other downstream 857126 3377815 ~ 3395158 (+) True AMCG00004793
TU180311 other downstream 1428737 3949426 ~ 3949837 (+) True G143366

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00069685 False 1293 processed_transcript 0.46 5 NC_007119.7 16023470 ~ 16079793 (+)
grasscarp (Ctenopharyngodon idella) CI01000010_04997746_05004248.mRNA True 1109 mRNA 0.49 4 CI01000010 4997386 ~ 5004248 (-)