RNA id: TU179988


Basic Information

Item Value
RNA id TU179988
length 4067
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G143095
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 2556854 ~ 2561991 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggaaacaaacacatttcagaagaaaataaaaatgacaacagcCTTTTCCCTCCTCAACCTTCCCTCCCACATTACAGGTTTATAATTGGTTCTGTGGCACTGTTTGGCGCTGCAGTCTTAAAGCCAGCAAGGGATACAGTGTGTACAACTGGCATGTAGTGCAAGTGTCAGTGTCAAGAGAATGGGTCATTCCATGGTGACTGACATGATGTTGTTTAAAGCAGTGAAGTCTCAAATGGCTGCgtagtgtattgtatttaaCGCTGCATCTAAGTAAAAGAGATGAAGCTTTAAAAAGTAAGCTAATTAGAGTTAATGAGGGTATAACATCAGTCACTATTAAACTGCCCAACTGCTGCTCACAGTTCCCATTGAAGCTAGCTTTTGCATGAAGAAGATAAGGATCCAAAGAATGGGTAGTTGCATAAGTTAGGCTACCGTTTTACTGCACATAGCACTGGAAGGCTGAGCCATCTGGAGATTGTAGCAGCTCTGCTATTAAAAAACTCCAAGCAGTTCAATTATCAAAACACTTTTTCTCAGATGCTCaatgatatataattatattatttaatgcatAATGTTGAATTCTGCTGAATgagaatgtgtatgtatttgtgtgggTATAAAGGTGACTTTAAATATTGTTGCCTCTAACAGATCCATATTGAGGTGCCTTTGGTTCcttgataaataatgaataaatgtacTGATAGAAGTAACAGTTTCATAACAACAGTTCACATAAAGTAGCATCTGAACAAGTCAGTTTAAATTGGTCAAAGTATGtctttttatattacattcaaTATCTATTGGGCACTACCTGATAATATCTGGCATTGTTCTTCTCAACTGAtttatcataaaaaataaaataaaataaatggtttgaaAAAAACATAGCCAATCATAATTTGTTAATATAATCAGTTGTATGAAGCACACATTACTTTTTTAACCGCTTTACATACTAAAGCAGGACAGGTTGATTGTATTTGAAGAAAGACTGCAGTGCCTAAACTGTGATAAggacatgattattttattttgttttggatccaaattgtattgtttccatAACACCATTTCATAAACTGTGTAGCGTGGTAGGAAGGTGTGGAGTGGCTTGCAAAACTACATAAACTTATCACAAGTTATATTGAACCAGAACAACTGTTAACATTCTAGTAAGACTAAACTTTATTGAAAaagattttaagatttttttaacaagacaagaaaaaagCAATAGCAAATTTAACTATCAACTAGGTTATGCATAGCGAGTAACTGTTTCTAGTACTTAGGGAAGAGCGTCACCAAccctcttatttttttcatatatatttttttttacattgtaatttTGATATATTGGTACAAAGCACAAACGTACTAAAAGTTTTCAGTGCACTGGACTAATGGAAGAGCCTCTCCCCTAGTCAATTTGTTCCCTTTAGCTCATAAACACCCACTCCCCATACCAGAATCACgaaaaaaacaccaataacataaaacaaacaaacaaataaataaatatataaataaatatttgtaattaattaaacaatcaataaataaatacatttattctaaGCTTTGTTCGGTTTTATTTTTGCGGCGGTAAGGTAAACTAAAcccataaaacatttttcacaagcGACATGACAACATATTAAACAAGATTTCCTCACGAGTTTTCTAACTTAATCACTTTGTAAAGTTGTCATATGAAAAGACAAGCTCAAACGAAAAAACAAGTGacaacttatatatatatatatatatatatatatatattggaaaagaaaaatactatatattatttattcgTACACAACAAATAAAGACACAGTTGTACCTTTCTAATAGCTCTTTTGAGGAAACAAATACCTAGACTAACAAAACTagctaataattattatttgattctGACCAAATGCATCACAACCAGCAAGTAACCTAAAAATTCGGCAAGCCAAAGAAAACTCGTTAAGTGATTCTAACGAGCCCCGTTTTTGGTCATCTGACTTTCCTGATGCACGCTGAGGAAAGCCAAACCAGAGGGGGtgacaattaaaatgaacaaaaacagcagctcAATTCAATGCGAACATCGAAGATTTTTCTAAACAACACATAGAACAACAAACTTGGATATTTAAGATATGTAAATCATGTTATATAGCACCTACCGCTGATCACTAAAGGAAGATTAGTTCAAACGTTActtttaaagaattaaaaattgatatatttattactGATATCCCATAGACTGATGACTGAAAGAAAAGCTGACGGTGCATCTCCTTGctttagggctctggactgtgTGGACCTTTTTGCATGGGAAAtcccttctccctttccccctTTGTATAACTCCTGTGTATAATTACATACTATGAAAAGGTATGAAGATCACCTgcctgcatttgttttcaccTTCTGTTTACAAAACAATCGCCGATCCAGTtttccaaaaacacacaaccttgaTCCTAAAAAGTACCAAGGCAGAACAAACAAGACAAGGTGGCAATATTTTTTCCCGTAAATTAGCcagtcaaaatatttttctcttttttcaaaTCCAGATTCTTGTAAAAAttcttcaatatttttttattagtattatttataaaaatagattttttttctctttttttcattttttcgaAATCCATTTTCAAGCAAAGAGATTTTCTCTTtggcaacattttttttttttttttttaatcatttacgTATGTCATCCGGAAAAGTGAACCCAACCCACCCTCTCCCTTTTCCCAAACCAAGTGAGGAaagacatgtattttgtttgcaatacaaaacaaaaatgtaagattttttcttttaatcaaagaaaaaaaaaacttaaaatgggGTTTTCAATTTTCACCAGATTTGCCTTTAACAAGAAAATTAATGAAAGGTCAAGTATTGTTAAAAAGactcaccccaccccaccccaccttACCCCACTCCACCCGTTATGAGAGGCAGATATTTAAAGACAGTGGATCCGGGTAAGAAAAAATCCcaagtcaaacaaaacagatattaaGAAAAGGACATTCTTGTCTTTAAAAGAAGGGGACCATTTTTGCTACTgtgtacagaagaaaaaaaaaagaagacaatcCTGCAACATCACAGGGTTTCCAAATTTTGACTGCTTTTGTTTGTAATACTTAGGCAACATTGGCTTATAGGTCCAAAGTTATAGTATAAGCCTTTTCCAGTCCTGTTGTTTGTATTCTATGTATTCCTGTTTGGAGTTGCTGCGTAGTGGCTGTTTAGGGTTCAGGACTTGTGGGTCTTGTTGGTTTTGAAAGACACCTGCAGCACACGGTCGCCCAGCCGGTAGCCGTTCAGACTGGCGATGGCCATGGCCGCCTCGTCGTAGTTCGTCATGGTAACAAAACCGAAGCCTTTACATTTGTTGGTGTTGAAGTCACGGATCACTTTGACGTTGTTGACCGCTCCAAAGGGCCCAAACAGCTGCCAGAGCACGCTCTCATCCGAGTCAGGAGACAGGTTGTACACAAAAATGCACCAGCCCGTTCCTGTGTGTCCAGGGATGTTCATGCCCACTAGGCTGGTCATGCTGTCTATGGTGATGGGGGAGAACCTACATACGAAcaatggagggggagagagaaaaagagatcCCAGTTCAGacCTTGACTGTGAACTAACATCTTgactgcacttagcttttactttccaggatgcaagacctcatttattgtatttacttgtgtaaattggaatttgtacaatgtattttgctttgaattgctttgtattatgtaaatttgaatttgtaatgtttgatgccttgtactgaactgtattcttgcactttgtattgcgcttatattttgtaagtcgccctggataagggcgtctgccaagaaataaaaattataataaaacactcCATTTGTGCTAGTGTTATGCGATcgtttgcctttcattatacCACAACGTTTAAAGAGGTATTGGTTCAAAAGAGGAAtcttgtaggtagtttgaaatgcCAGCACTTCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179952 lncRNA downstream 266714 2289579 ~ 2290140 (-) True G143062
TU179935 lncRNA downstream 632571 1895088 ~ 1924283 (-) True G143046
TU179873 lncRNA downstream 1029044 1527578 ~ 1527810 (-) True G142990
TU179849 lncRNA downstream 1170167 1386423 ~ 1386687 (-) True G142972
TU179843 lncRNA downstream 1175975 1379880 ~ 1380879 (-) True G142967
TU179998 lncRNA upstream 78587 2640578 ~ 2640860 (-) True G143105
TU180044 lncRNA upstream 119329 2681320 ~ 2681561 (-) True G143142
TU180046 lncRNA upstream 129365 2691356 ~ 2691959 (-) True G143144
TU180038 lncRNA upstream 169417 2731408 ~ 2736699 (-) True G143140
TU180052 lncRNA upstream 312376 2874367 ~ 2913555 (-) True G143149
AMCG00004781 mRNA downstream 352359 2201211 ~ 2204495 (-) True AMCG00004781
AMCG00004780 mRNA downstream 644713 1896280 ~ 1912141 (-) True AMCG00004780
AMCG00004777 mRNA downstream 838592 1691028 ~ 1718262 (-) True AMCG00004777
AMCG00004778 mRNA downstream 950588 1561785 ~ 1606266 (-) True AMCG00004778
AMCG00004779 mRNA downstream 1036368 1519517 ~ 1520486 (-) True AMCG00004779
AMCG00004785 mRNA upstream 127255 2689246 ~ 2691272 (-) True AMCG00004785
AMCG00004787 mRNA upstream 132034 2694025 ~ 2993047 (-) True AMCG00004787
AMCG00004789 mRNA upstream 475191 3037182 ~ 3047714 (-) True AMCG00004789
AMCG00004790 mRNA upstream 558238 3120229 ~ 3217229 (-) True AMCG00004790
AMCG00004794 mRNA upstream 843858 3405849 ~ 3416284 (-) True AMCG00004794
TU179730 other downstream 1910475 644004 ~ 646379 (-) True AMCG00004763
TU179586 other downstream 2426151 127778 ~ 130703 (-) True G142773
TU179583 other downstream 2434327 119695 ~ 122527 (-) True G142770
TU180047 other upstream 147563 2709554 ~ 2710004 (-) True G143145
TU180095 other upstream 576866 3138857 ~ 3160673 (-) False AMCG00004790
TU180096 other upstream 576866 3138857 ~ 3200167 (-) False AMCG00004790
TU180357 other upstream 1551756 4113747 ~ 4116414 (-) False AMCG00004819
TU180667 other upstream 3174818 5736809 ~ 5783184 (-) True G143659

Expression Profile