RNA id: TU179998


Basic Information

Item Value
RNA id TU179998
length 283
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G143105
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 2640578 ~ 2640860 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atatatatatataacgagaagttacctgacataaatactaacctgcttTACTAAcctatttaatgtccgactaacaatactaatgagagactcaccttcgtcttactaaccggtattgtagtcaatgtgtttataaccttttttgtttaacgatttgtgtgatatcatatgcaatcccatggtctttgatttggtcacggaagtgatttgtctttgatttgttgatctagagttgaattttaattagtttttcccttttgtataattagtgtagtgctacatt

Function

GO: NA

KEGG:

id description
ko00830 Retinol metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179988 lncRNA downstream 78587 2556854 ~ 2561991 (-) True G143095
TU179952 lncRNA downstream 350438 2289579 ~ 2290140 (-) True G143062
TU179935 lncRNA downstream 716295 1895088 ~ 1924283 (-) True G143046
TU179873 lncRNA downstream 1112768 1527578 ~ 1527810 (-) True G142990
TU179849 lncRNA downstream 1253891 1386423 ~ 1386687 (-) True G142972
TU180044 lncRNA upstream 40460 2681320 ~ 2681561 (-) True G143142
TU180046 lncRNA upstream 50496 2691356 ~ 2691959 (-) True G143144
TU180038 lncRNA upstream 90548 2731408 ~ 2736699 (-) True G143140
TU180052 lncRNA upstream 233507 2874367 ~ 2913555 (-) True G143149
TU180063 lncRNA upstream 363562 3004422 ~ 3004673 (-) True G143158
AMCG00004781 mRNA downstream 436083 2201211 ~ 2204495 (-) True AMCG00004781
AMCG00004780 mRNA downstream 728437 1896280 ~ 1912141 (-) True AMCG00004780
AMCG00004777 mRNA downstream 922316 1691028 ~ 1718262 (-) True AMCG00004777
AMCG00004778 mRNA downstream 1034312 1561785 ~ 1606266 (-) True AMCG00004778
AMCG00004779 mRNA downstream 1120092 1519517 ~ 1520486 (-) True AMCG00004779
AMCG00004785 mRNA upstream 48386 2689246 ~ 2691272 (-) True AMCG00004785
AMCG00004787 mRNA upstream 53165 2694025 ~ 2993047 (-) True AMCG00004787
AMCG00004789 mRNA upstream 396322 3037182 ~ 3047714 (-) True AMCG00004789
AMCG00004790 mRNA upstream 479369 3120229 ~ 3217229 (-) True AMCG00004790
AMCG00004794 mRNA upstream 764989 3405849 ~ 3416284 (-) True AMCG00004794
TU179730 other downstream 1994199 644004 ~ 646379 (-) True AMCG00004763
TU179586 other downstream 2509875 127778 ~ 130703 (-) True G142773
TU179583 other downstream 2518051 119695 ~ 122527 (-) True G142770
TU180047 other upstream 68694 2709554 ~ 2710004 (-) True G143145
TU180095 other upstream 497997 3138857 ~ 3160673 (-) False AMCG00004790
TU180096 other upstream 497997 3138857 ~ 3200167 (-) False AMCG00004790
TU180357 other upstream 1472887 4113747 ~ 4116414 (-) False AMCG00004819
TU180667 other upstream 3095949 5736809 ~ 5783184 (-) True G143659

Expression Profile