RNA id: TU180038


Basic Information

Item Value
RNA id TU180038
length 1036
lncRNA type intronic
GC content 0.45
exon number 2
gene id G143140
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 2731408 ~ 2736699 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

attatacactcacctaaaggattattaggaacaccatactaatactgtgtttgaccccctttcgccttcagaactgccttaattctacgtggcattgattcaacaaggtgctgaaagcattctttagaaatgttggcccatattgataggatagcatcttgcagttgatggagatttgtgggatgcacatccagggcacgaagctcccgttccaccacatcccaaagatgctctattgggttgagatctggtgactgtgggggccagtttagtacagtgaactcattgtcatgttcaagaaaccaatttgaaatgattcgacctttgtgacatggtgcattatcctgctggaagtagccatcagaggatgggtacatggtggtcataaagggatggacatggtcagaaacaatgctcaggtaggccATGGCATTTAAACGATGCCCAATTGGCACTAAGGGGCCCATCCCAATTGGCACTAAGGAGCCCATCCGCCTCAAGGTTGTACTtgttgtggcttcacaaatgctttgcttCATACCTCAGTTGTaacgagtggttatttcagtcaaagttgctcttctatcagcttgaatcagtcggcccattctcctctgacctctagcatcaacaaggcattttcgcccacaggactgccgcatactggatgtttttcccttttcacaccattctttgtaaaccctagaaatggttgtgcgtgaaaatcccagtaactgagcagattgtgaaatactcagaccggcccgtctggcaccaacaaccatgccacgctcaaaattgcttaaatcacctttctttcccattcagacattcagtttggagttcaggagattgtcttgaccaggaccacacccctaaatgcattgaagcaactgccatgtgattggttggttagataattgcattaatgagaaattgaacaggtgttcctaataatcctttagGGTCAAGCTACCTCTGCAAAGACGCTTCCTGATCCAGCTCAACCAACTGTCACACAGTCACTTGCAAAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180046 lncRNA downstream 39449 2691356 ~ 2691959 (-) True G143144
TU180044 lncRNA downstream 49847 2681320 ~ 2681561 (-) True G143142
TU179998 lncRNA downstream 90548 2640578 ~ 2640860 (-) True G143105
TU179988 lncRNA downstream 169417 2556854 ~ 2561991 (-) True G143095
TU179952 lncRNA downstream 441268 2289579 ~ 2290140 (-) True G143062
TU180052 lncRNA upstream 137668 2874367 ~ 2913555 (-) True G143149
TU180063 lncRNA upstream 267723 3004422 ~ 3004673 (-) True G143158
TU180085 lncRNA upstream 361803 3098502 ~ 3098715 (-) True G143177
TU180088 lncRNA upstream 368596 3105295 ~ 3107829 (-) True G143180
TU180102 lncRNA upstream 487528 3224227 ~ 3224490 (-) True G143189
AMCG00004785 mRNA downstream 40136 2689246 ~ 2691272 (-) True AMCG00004785
AMCG00004781 mRNA downstream 526913 2201211 ~ 2204495 (-) True AMCG00004781
AMCG00004780 mRNA downstream 819267 1896280 ~ 1912141 (-) True AMCG00004780
AMCG00004777 mRNA downstream 1013146 1691028 ~ 1718262 (-) True AMCG00004777
AMCG00004778 mRNA downstream 1125142 1561785 ~ 1606266 (-) True AMCG00004778
AMCG00004789 mRNA upstream 300483 3037182 ~ 3047714 (-) True AMCG00004789
AMCG00004790 mRNA upstream 383530 3120229 ~ 3217229 (-) True AMCG00004790
AMCG00004794 mRNA upstream 669150 3405849 ~ 3416284 (-) True AMCG00004794
AMCG00004799 mRNA upstream 876212 3612911 ~ 3632903 (-) True AMCG00004799
AMCG00004800 mRNA upstream 904791 3641490 ~ 3648200 (-) True AMCG00004800
TU180047 other downstream 21404 2709554 ~ 2710004 (-) True G143145
TU179730 other downstream 2085029 644004 ~ 646379 (-) True AMCG00004763
TU179586 other downstream 2600705 127778 ~ 130703 (-) True G142773
TU179583 other downstream 2608881 119695 ~ 122527 (-) True G142770
TU180095 other upstream 402158 3138857 ~ 3160673 (-) False AMCG00004790
TU180096 other upstream 402158 3138857 ~ 3200167 (-) False AMCG00004790
TU180357 other upstream 1377048 4113747 ~ 4116414 (-) False AMCG00004819
TU180667 other upstream 3000110 5736809 ~ 5783184 (-) True G143659
TU181155 other upstream 5617290 8353989 ~ 8377001 (-) True G144050

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU92285 True 965 lncRNA 0.41 1 CI01000013 4792804 ~ 4793768 (-)
eurasian perch (Perca fluviatilis) TU92285 True 752 TUCP 0.40 2 NC_053117.1 41754872 ~ 41782162 (-)