RNA id: TU180046


Basic Information

Item Value
RNA id TU180046
length 604
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G143144
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 2691356 ~ 2691959 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttgcttctgcGTCTGATTTTCACGCACAATCCAGATATTTTGTTTCTACCCTGCTTCCAGTGTTTTTGGATTACAGATTTAAAGGCAAACCTGTTGAATGTCGTCCCGCTTTTAaggaaaatctgttttaatgtttgaagGATATGTCAATGGATAGCAAACAGCGAGACTAGTATTGTCTAGAACTGATCGGCATGGAAAGTATTGCTAAATTAGGATTTATAGTATAGGACGTGCGTTCGGCGTATTGTTTTTACTTTCGTTCGAATGATTACGAAGAAACACAGTAGAAAATATTCGCTGAAGATATTTTTTAGTCTGCGCTGCGTGacatgtacaaatataaaaaactttccattagtttttttgtttctggtttgGGCAGCCAAAATCGATAATAAGTCTAATGTTCTGTCTTTACAGTGTGGAGGTATGGAAATAGTTATAACTGTCTAATAAAACCTTCGTAGGCGAACCACAGcctatatgtttgtttgtttctctctctctctgtatatattttttattgcgctgaaaaaaataactgatacgtttgtgatgtttttgttttaaattcccaATTAAGCGACCCGTTAAAGTGAG

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180044 lncRNA downstream 9795 2681320 ~ 2681561 (-) True G143142
TU179998 lncRNA downstream 50496 2640578 ~ 2640860 (-) True G143105
TU179988 lncRNA downstream 129365 2556854 ~ 2561991 (-) True G143095
TU179952 lncRNA downstream 401216 2289579 ~ 2290140 (-) True G143062
TU179935 lncRNA downstream 767073 1895088 ~ 1924283 (-) True G143046
TU180038 lncRNA upstream 39449 2731408 ~ 2736699 (-) True G143140
TU180052 lncRNA upstream 182408 2874367 ~ 2913555 (-) True G143149
TU180063 lncRNA upstream 312463 3004422 ~ 3004673 (-) True G143158
TU180085 lncRNA upstream 406543 3098502 ~ 3098715 (-) True G143177
TU180088 lncRNA upstream 413336 3105295 ~ 3107829 (-) True G143180
AMCG00004785 mRNA downstream 84 2689246 ~ 2691272 (-) True AMCG00004785
AMCG00004781 mRNA downstream 486861 2201211 ~ 2204495 (-) True AMCG00004781
AMCG00004780 mRNA downstream 779215 1896280 ~ 1912141 (-) True AMCG00004780
AMCG00004777 mRNA downstream 973094 1691028 ~ 1718262 (-) True AMCG00004777
AMCG00004778 mRNA downstream 1085090 1561785 ~ 1606266 (-) True AMCG00004778
AMCG00004787 mRNA upstream 2066 2694025 ~ 2993047 (-) True AMCG00004787
AMCG00004789 mRNA upstream 345223 3037182 ~ 3047714 (-) True AMCG00004789
AMCG00004790 mRNA upstream 428270 3120229 ~ 3217229 (-) True AMCG00004790
AMCG00004794 mRNA upstream 713890 3405849 ~ 3416284 (-) True AMCG00004794
AMCG00004799 mRNA upstream 920952 3612911 ~ 3632903 (-) True AMCG00004799
TU179730 other downstream 2044977 644004 ~ 646379 (-) True AMCG00004763
TU179586 other downstream 2560653 127778 ~ 130703 (-) True G142773
TU179583 other downstream 2568829 119695 ~ 122527 (-) True G142770
TU180047 other upstream 17595 2709554 ~ 2710004 (-) True G143145
TU180095 other upstream 446898 3138857 ~ 3160673 (-) False AMCG00004790
TU180096 other upstream 446898 3138857 ~ 3200167 (-) False AMCG00004790
TU180357 other upstream 1421788 4113747 ~ 4116414 (-) False AMCG00004819
TU180667 other upstream 3044850 5736809 ~ 5783184 (-) True G143659

Expression Profile