RNA id: TU180052


Basic Information

Item Value
RNA id TU180052
length 356
lncRNA type sense_over
GC content 0.52
exon number 2
gene id G143149
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 2874367 ~ 2913555 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttgagatctggggaatttggaggccaagtcaacaccttgaactcgtgattcatcagaccaggccaccttcttccattgctccatggtccagttctgatgctcacgtgctgtggacaggggtcagcatgggcaccctgactggtctgcagctacgcagccatatacacaacaaactgcgatgcactgtgtgttctgacacctttctatcagaaccagcattaactttttcagcaaattgagctacagtagctcatctgttggatcggaccacacgggccagccttcgctccccacatgcatcaatgagccttggctgcccatgaccctgtcaccggctcactgcttttccttccttg

Function

GO:

id name namespace
GO:0072350 tricarboxylic acid metabolic process biological_process
GO:0006099 tricarboxylic acid cycle biological_process
GO:0006101 citrate metabolic process biological_process
GO:0009060 aerobic respiration biological_process
GO:0070546 L-phenylalanine aminotransferase activity molecular_function
GO:0080130 L-phenylalanine molecular_function
GO:0008793 aromatic-amino-acid molecular_function

KEGG:

id description
ko00020 Citrate cycle (TCA cycle)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180038 lncRNA downstream 137668 2731408 ~ 2736699 (-) True G143140
TU180046 lncRNA downstream 182408 2691356 ~ 2691959 (-) True G143144
TU180044 lncRNA downstream 192806 2681320 ~ 2681561 (-) True G143142
TU179998 lncRNA downstream 233507 2640578 ~ 2640860 (-) True G143105
TU179988 lncRNA downstream 312376 2556854 ~ 2561991 (-) True G143095
TU180063 lncRNA upstream 90867 3004422 ~ 3004673 (-) True G143158
TU180085 lncRNA upstream 184947 3098502 ~ 3098715 (-) True G143177
TU180088 lncRNA upstream 191740 3105295 ~ 3107829 (-) True G143180
TU180102 lncRNA upstream 310672 3224227 ~ 3224490 (-) True G143189
TU180122 lncRNA upstream 342256 3255811 ~ 3257926 (-) True G143206
AMCG00004785 mRNA downstream 183095 2689246 ~ 2691272 (-) True AMCG00004785
AMCG00004781 mRNA downstream 669872 2201211 ~ 2204495 (-) True AMCG00004781
AMCG00004780 mRNA downstream 962226 1896280 ~ 1912141 (-) True AMCG00004780
AMCG00004777 mRNA downstream 1156105 1691028 ~ 1718262 (-) True AMCG00004777
AMCG00004778 mRNA downstream 1268101 1561785 ~ 1606266 (-) True AMCG00004778
AMCG00004789 mRNA upstream 123627 3037182 ~ 3047714 (-) True AMCG00004789
AMCG00004790 mRNA upstream 206674 3120229 ~ 3217229 (-) True AMCG00004790
AMCG00004794 mRNA upstream 492294 3405849 ~ 3416284 (-) True AMCG00004794
AMCG00004799 mRNA upstream 699356 3612911 ~ 3632903 (-) True AMCG00004799
AMCG00004800 mRNA upstream 727935 3641490 ~ 3648200 (-) True AMCG00004800
TU180047 other downstream 164363 2709554 ~ 2710004 (-) True G143145
TU179730 other downstream 2227988 644004 ~ 646379 (-) True AMCG00004763
TU179586 other downstream 2743664 127778 ~ 130703 (-) True G142773
TU179583 other downstream 2751840 119695 ~ 122527 (-) True G142770
TU180095 other upstream 225302 3138857 ~ 3160673 (-) False AMCG00004790
TU180096 other upstream 225302 3138857 ~ 3200167 (-) False AMCG00004790
TU180357 other upstream 1200192 4113747 ~ 4116414 (-) False AMCG00004819
TU180667 other upstream 2823254 5736809 ~ 5783184 (-) True G143659
TU181155 other upstream 5440434 8353989 ~ 8377001 (-) True G144050

Expression Profile