RNA id: TU180072


Basic Information

Item Value
RNA id TU180072
length 2023
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G143166
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 3084372 ~ 3086394 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgaagactctgtataggatgttgaagaaagtgttttgtgataattatataatgttttatattaatactagcattagaagtagtttgtatacagactgagcagattagatttagcaggacaagtaaagggtcaacaaggttggtttgttagaatctcctgtcagtaatgaaagattacacagtgctgaaatagcctatagatgtctgctgtgaatttgtttatgacttaatcgtttctcaagataggcaggaatgtttctgttactgagcgattgacactaggtaaatgaccaccgtgggatcgcatcttcctagtgcacatcaaagacggacatctgctttttgtatccatcacctcttcacgggaggacagatcgtaaacggactcGGACCTTTATCTTccgattggatgaacggccataagatgttacgtcatttttcctataaagttgtactcatgtttgtaaacattaagtctcactgaaggaattatttctgacgtggggcttccgagcggctcgattaaagttctatttgctttgtctccgcgacttctccacttatttctgagacggttctacaacCTGGCGTCACGATCGAGGATCTGAATTTGCCTCCACTCCCGGGACCAAAATATGGGTGAGTAGCTTTAAAATgaccaccctgtatatttagatttgatctcgGGATTGTGTGAGTCTctcagattgtaatttaaagagaacctgtggagaggcagaggtaaaacaaatagaaaggttgACTGTACAGCGGAGGTTCACAGTAGGGTGAACTCCAGGTAagacagatctgcggggagAGATGCCAAGGGAACCGAAAGGTACGACGAGGCCTGCTGAGCTCCAAGTTAAGCAAGAAAATCCTTGTACGCTGAGACAGTCAGTGGCAGTCAAAGCCAGACGGAACCTGAGGTACATAAAGTCCAGCGATATAGCCCCATCGTTGGCAAAGATAGGATTGGCATAATGGCGTTAAAAtacgtgtctgtatgtgaattcctacaggtttaaaatgttaaatttaaaatgataagagaagtttaaaaatgttaaacttaaaatggtaaagacaagataaaaaaactgacaaagtttctataattctttgtctgaataataagaatttagagaagaaattgatcatAATAGATCAAGAAAACCCCAAAGTAGTGTAATtcaaagattattttacatctgatttttaataataacaatataataaataaataaatgctaagggctgtttgagacaAAACACGCCACTAATCtaatatctgaattatctttggatttcaatctgtatgtgctttgtgtgtttatttacatatatctaAACATAATAGTCTGAAGGTTATGTaaggtaaatgtctgttttgtatgctttgtatttttaatattgtgcatagtccagaataaaactgagaagggaagtaaccaataatttcagaattatatttacaattacgcagttattgatgttttaacaacagattaatgaggatttagacatttaactgtatacagagtgcataagcatcagaaataagaaatgaataatgaattctattataagaataatgttaaagtaataaaaaatatacattaaatacatagtattattaatctaataaagtaaataaatagtaatggtGTCCTCTAAGACTCAGAAGAACaagaatttgtttgttaaaaatcatattatggacaaattctgtaaagtcaaattaaaggaaaactaaaggCTGGAATCCACAGGAGCAGCACTCTGGTGCAGCCCTGAGTgacagcctgatgtaaaatccatAGCAGGGGAATGTAAACAGTATAGTGACATATTATAatcttattttagaaaatatttggttATTAGTGCATtgcataaaatacctgaaataaaagttaaaattagacctTGGATTTAAGATGAGTGAATTAGTCAAAGGGTAAGAATTTTAAGGatactatagaaatataaattatgagcattgaataagtgagctaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180005 lncRNA upstream 322742 2720298 ~ 2761630 (+) True G143109
TU180000 lncRNA upstream 402824 2681304 ~ 2681548 (+) True G143107
TU179964 lncRNA upstream 521983 2559317 ~ 2562389 (+) True G143074
TU179965 lncRNA upstream 521983 2559317 ~ 2562389 (+) False G143074
TU179912 lncRNA upstream 775498 2259729 ~ 2308874 (+) True G143029
TU180076 lncRNA downstream 12728 3099122 ~ 3099384 (+) True G143170
TU180105 lncRNA downstream 148259 3234653 ~ 3236347 (+) True G143192
TU180109 lncRNA downstream 224513 3310907 ~ 3376024 (+) True G143195
TU180138 lncRNA downstream 290675 3377069 ~ 3377271 (+) True G143218
TU180159 lncRNA downstream 494688 3581082 ~ 3588105 (+) True G143237
AMCG00004786 mRNA upstream 81447 2998006 ~ 3002925 (+) True AMCG00004786
AMCG00004784 mRNA upstream 131748 2952311 ~ 2952624 (+) True AMCG00004784
AMCG00004783 mRNA upstream 525699 2548607 ~ 2558673 (+) True AMCG00004783
AMCG00004782 mRNA upstream 593682 2490454 ~ 2490690 (+) True AMCG00004782
AMCG00004775 mRNA upstream 1627122 1435263 ~ 1457250 (+) True AMCG00004775
AMCG00004788 mRNA downstream 36873 3123267 ~ 3160209 (+) False AMCG00004788
AMCG00004791 mRNA downstream 165576 3251970 ~ 3262480 (+) True AMCG00004791
AMCG00004792 mRNA downstream 216109 3302503 ~ 3307925 (+) True AMCG00004792
AMCG00004793 mRNA downstream 292336 3378730 ~ 3390366 (+) False AMCG00004793
AMCG00004795 mRNA downstream 446090 3532484 ~ 3556450 (+) True AMCG00004795
TU179967 other upstream 525292 2548587 ~ 2559080 (+) True G143075
TU179968 other upstream 563683 2440541 ~ 2520689 (+) False G143075
TU180082 other downstream 36687 3123081 ~ 3124482 (+) True AMCG00004788
TU180081 other downstream 36829 3123223 ~ 3124482 (+) False AMCG00004788
TU180140 other downstream 291421 3377815 ~ 3395158 (+) True AMCG00004793
TU180311 other downstream 863032 3949426 ~ 3949837 (+) True G143366
TU180351 other downstream 1022628 4109022 ~ 4109655 (+) True G143404

Expression Profile