RNA id: TU180119


Basic Information

Item Value
RNA id TU180119
length 593
lncRNA type inter_gene
GC content 0.44
exon number 4
gene id G143204
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 3373033 ~ 3375723 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AACATACCTCTCTCTGTACAGGATGAGTTGCTGGATCCAGAGAAAAAGCCAGAACCCCAACAGTCCAGCTCTGCTACAGAAAGTGGACTAGACTTCTTCCAGGCAGACCCTTTCACTGATAatGACCCATTCAAAGATGATCCATTTGCAAAGGTGGATGTCGCAGATCCCTTTGGTGGTGACCCATTCAAAGGCACGGATCCCTTTGCTGCTGACTCCTTCTTCAAGCAGCCCTCAATCGACCCCTTCTCCTCTGAAGATCCCTTCGGTGGCACAGTGGCCAGCCCCCTAGAAGATGATCTTTTTGGTTCCAAACTAAACAACATGGAGGATGCTGATCCATTTGGAAACCCTGCTGATAGCACTGAACTGGCCAAGGAGGTATCCCAGGTGAATGATCCATTTGCTCCAGGAGGCACCACAGTGACCTCAGACTCTAACCCAGGTGAGTTTactttttaacaatattttttttagtctAAAGCAAGAGAGTCCTGGTTATGGGTCACTTTTAGATTATCAATTTATATTACCTACAATTAAATAAGTGTTAAGCCCtttacataagaaaataagaatataagaaagtttgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180122 lncRNA downstream 115107 3255811 ~ 3257926 (-) True G143206
TU180102 lncRNA downstream 148543 3224227 ~ 3224490 (-) True G143189
TU180088 lncRNA downstream 265204 3105295 ~ 3107829 (-) True G143180
TU180085 lncRNA downstream 274318 3098502 ~ 3098715 (-) True G143177
TU180063 lncRNA downstream 368360 3004422 ~ 3004673 (-) True G143158
TU180180 lncRNA upstream 205427 3581150 ~ 3582183 (-) True G143256
TU180182 lncRNA upstream 214272 3589995 ~ 3591305 (-) True G143258
TU180247 lncRNA upstream 372205 3747928 ~ 3770343 (-) True G143311
TU180255 lncRNA upstream 395847 3771570 ~ 3771882 (-) True G143318
TU180296 lncRNA upstream 522493 3898216 ~ 3902159 (-) True G143355
AMCG00004790 mRNA downstream 155804 3120229 ~ 3217229 (-) True AMCG00004790
AMCG00004789 mRNA downstream 325319 3037182 ~ 3047714 (-) True AMCG00004789
AMCG00004787 mRNA downstream 379986 2694025 ~ 2993047 (-) True AMCG00004787
AMCG00004785 mRNA downstream 681761 2689246 ~ 2691272 (-) True AMCG00004785
AMCG00004781 mRNA downstream 1168538 2201211 ~ 2204495 (-) True AMCG00004781
AMCG00004794 mRNA upstream 30126 3405849 ~ 3416284 (-) True AMCG00004794
AMCG00004799 mRNA upstream 237188 3612911 ~ 3632903 (-) True AMCG00004799
AMCG00004800 mRNA upstream 265767 3641490 ~ 3648200 (-) True AMCG00004800
AMCG00004802 mRNA upstream 273037 3648760 ~ 3654005 (-) True AMCG00004802
AMCG00004801 mRNA upstream 285142 3660865 ~ 3674824 (-) True AMCG00004801
TU180096 other downstream 172866 3138857 ~ 3200167 (-) False AMCG00004790
TU180095 other downstream 212360 3138857 ~ 3160673 (-) False AMCG00004790
TU180047 other downstream 663029 2709554 ~ 2710004 (-) True G143145
TU179730 other downstream 2726654 644004 ~ 646379 (-) True AMCG00004763
TU179586 other downstream 3242330 127778 ~ 130703 (-) True G142773
TU180357 other upstream 738024 4113747 ~ 4116414 (-) False AMCG00004819
TU180667 other upstream 2361086 5736809 ~ 5783184 (-) True G143659
TU181155 other upstream 4978266 8353989 ~ 8377001 (-) True G144050
TU181227 other upstream 5460637 8836360 ~ 8840988 (-) False AMCG00004894
TU181238 other upstream 5497162 8872885 ~ 8906594 (-) True G144115

Expression Profile