RNA id: TU180315


Basic Information

Item Value
RNA id TU180315
length 423
lncRNA type inter_gene
GC content 0.56
exon number 1
gene id G143370
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 3949415 ~ 3949837 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATttcctcaggccaagagcgagacccatcctctccatgacgagctgcaggtattcgtggcccactctgtcgaaggctttctcctggtccaagctgattaggaccaggggaagccctctccaccacagacctggtcgggacccacgacttgagggagtggccgctgcagccggagcgtcagtgctttggccagtatcttgtagtcggtgcacaggaggctgaccggccACCAGTTCCTCAGATCTTTTTGGTCTCCCTTCTTGTGAAGAAGGGAGAGGATACTCTTCTTCATAGAAGGGGCCAatctaccctctctgtacatCGACCCCAAGACCTGGGCCAGATCTTCtttaagcacctcccaaaagatcttatagaacTCAGCAGGAATCCCATCGGGacccggtgtccttccagagttacG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180296 lncRNA downstream 47256 3898216 ~ 3902159 (-) True G143355
TU180255 lncRNA downstream 177533 3771570 ~ 3771882 (-) True G143318
TU180247 lncRNA downstream 179072 3747928 ~ 3770343 (-) True G143311
TU180182 lncRNA downstream 358110 3589995 ~ 3591305 (-) True G143258
TU180180 lncRNA downstream 367232 3581150 ~ 3582183 (-) True G143256
TU180317 lncRNA upstream 22479 3972316 ~ 3972545 (-) True G143372
TU180342 lncRNA upstream 135609 4085446 ~ 4088993 (-) True G143396
TU180346 lncRNA upstream 144813 4094650 ~ 4098416 (-) True G143400
TU180353 lncRNA upstream 157682 4107519 ~ 4108856 (-) True G143406
TU180381 lncRNA upstream 238121 4187958 ~ 4191281 (-) True G143430
AMCG00004812 mRNA downstream 14410 3932126 ~ 3935005 (-) True AMCG00004812
AMCG00004811 mRNA downstream 34454 3908147 ~ 3914961 (-) True AMCG00004811
AMCG00004808 mRNA downstream 85336 3856496 ~ 3864079 (-) True AMCG00004808
AMCG00004801 mRNA downstream 274591 3660865 ~ 3674824 (-) True AMCG00004801
AMCG00004802 mRNA downstream 295410 3648760 ~ 3654005 (-) True AMCG00004802
AMCG00004819 mRNA upstream 159245 4109082 ~ 4114193 (-) True AMCG00004819
AMCG00004820 mRNA upstream 183872 4133709 ~ 4150001 (-) True AMCG00004820
AMCG00004823 mRNA upstream 251171 4201008 ~ 4217993 (-) True AMCG00004823
AMCG00004824 mRNA upstream 375126 4324963 ~ 4359936 (-) True AMCG00004824
AMCG00004829 mRNA upstream 489703 4439540 ~ 4482780 (-) True AMCG00004829
TU180096 other downstream 749248 3138857 ~ 3200167 (-) False AMCG00004790
TU180095 other downstream 788742 3138857 ~ 3160673 (-) False AMCG00004790
TU180047 other downstream 1239411 2709554 ~ 2710004 (-) True G143145
TU179730 other downstream 3303036 644004 ~ 646379 (-) True AMCG00004763
TU179586 other downstream 3818712 127778 ~ 130703 (-) True G142773
TU180357 other upstream 163910 4113747 ~ 4116414 (-) False AMCG00004819
TU180667 other upstream 1786972 5736809 ~ 5783184 (-) True G143659
TU181155 other upstream 4404152 8353989 ~ 8377001 (-) True G144050
TU181227 other upstream 4886523 8836360 ~ 8840988 (-) False AMCG00004894
TU181238 other upstream 4923048 8872885 ~ 8906594 (-) True G144115

Expression Profile