RNA id: TU180346


Basic Information

Item Value
RNA id TU180346
length 788
lncRNA type inter_gene
GC content 0.52
exon number 3
gene id G143400
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 4094650 ~ 4098416 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctatttgtgtgtgtgtctgaagcTGGCATAGGACCCAGTACCTGGCAGATTGGCCCTTGAGGGGCTGAAGAGGTCGTGAATGCCCATGTCTTCCAGCTTTTCCTTCAGGCTGAAGTTGTCCTCGATACGGAAGCGGGGGACTTGCACGGCCACTGTGGTCTCCGTCAAGGTGTCCAGCCACCCCAGCAGCTTCTTGAGGTCCAGGGTCGCCTCCACCTCTGCCAGGGGAGTGTCCTTCATGGGCAGGATCAGCACCATGGTGATGTCATTGCCTTTGTAGGGCAGCTCCAGCACTTTGACCTTGTCCTCTGGGAACTTTGCATAGCGAAACTTCTTCTCCTGGTACATCATGGACACCTGACAGATCTCTGTACTGGTCAGATGGAAGTCTGCTTTATAAACACTCTCCTTGTCAAACTTCTCCTTCCATTGTCCCTTGAAGTAGATGGTGTTTACAAGGACTAGAACTGTATCTACACCAATAACTCCCTCGGGGAGGACATCTTTAATCCTTTGCTCGGTTTTGTTGGCTACCCAGTCATTGATGACAACCCGGGACAATTCTGGCTTTCCTTAAAGTTGAGAGGCAAGAGCTTGGCCCCATAGACCATTTCACTGATGTTCTGGAAGGTCTCACTGTAGGTCAGGGACTTCTCCCCAAAGAGCCGGTTGGCAGAACTGAGCACGGAGGACTTGTCTGCCTTTCGGTACAGCCTGCAATTGAGCTTGGCAAAGAAGAAGTGCACCTGGTCGGACGTCTTCTCCTTGATCGTGTTAAACTGGAACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180342 lncRNA downstream 5657 4085446 ~ 4088993 (-) True G143396
TU180317 lncRNA downstream 122105 3972316 ~ 3972545 (-) True G143372
TU180315 lncRNA downstream 144813 3949415 ~ 3949837 (-) True G143370
TU180296 lncRNA downstream 192491 3898216 ~ 3902159 (-) True G143355
TU180255 lncRNA downstream 322768 3771570 ~ 3771882 (-) True G143318
TU180353 lncRNA upstream 9103 4107519 ~ 4108856 (-) True G143406
TU180381 lncRNA upstream 89542 4187958 ~ 4191281 (-) True G143430
TU180501 lncRNA upstream 693274 4791690 ~ 4858146 (-) True G143528
TU180512 lncRNA upstream 886972 4985388 ~ 4985694 (-) True G143539
TU180521 lncRNA upstream 918431 5016847 ~ 5017631 (-) True G143544
AMCG00004812 mRNA downstream 159645 3932126 ~ 3935005 (-) True AMCG00004812
AMCG00004811 mRNA downstream 179689 3908147 ~ 3914961 (-) True AMCG00004811
AMCG00004808 mRNA downstream 230571 3856496 ~ 3864079 (-) True AMCG00004808
AMCG00004801 mRNA downstream 419826 3660865 ~ 3674824 (-) True AMCG00004801
AMCG00004802 mRNA downstream 440645 3648760 ~ 3654005 (-) True AMCG00004802
AMCG00004819 mRNA upstream 10666 4109082 ~ 4114193 (-) True AMCG00004819
AMCG00004820 mRNA upstream 35293 4133709 ~ 4150001 (-) True AMCG00004820
AMCG00004823 mRNA upstream 102592 4201008 ~ 4217993 (-) True AMCG00004823
AMCG00004824 mRNA upstream 226547 4324963 ~ 4359936 (-) True AMCG00004824
AMCG00004829 mRNA upstream 341124 4439540 ~ 4482780 (-) True AMCG00004829
TU180096 other downstream 894483 3138857 ~ 3200167 (-) False AMCG00004790
TU180095 other downstream 933977 3138857 ~ 3160673 (-) False AMCG00004790
TU180047 other downstream 1384646 2709554 ~ 2710004 (-) True G143145
TU179730 other downstream 3448271 644004 ~ 646379 (-) True AMCG00004763
TU179586 other downstream 3963947 127778 ~ 130703 (-) True G142773
TU180357 other upstream 15331 4113747 ~ 4116414 (-) False AMCG00004819
TU180667 other upstream 1638393 5736809 ~ 5783184 (-) True G143659
TU181155 other upstream 4255573 8353989 ~ 8377001 (-) True G144050
TU181227 other upstream 4737944 8836360 ~ 8840988 (-) False AMCG00004894
TU181238 other upstream 4774469 8872885 ~ 8906594 (-) True G144115

Expression Profile