RNA id: TU180351



Basic Information


Item Value
RNA id TU180351
length 634
RNA type TUCP
GC content 0.62
exon number 1
gene id G143404
representative True

Chromosome Information


Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 4109022 ~ 4109655 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTTGATTTTCCCACCCAGCCCTCCCCAACCCCAAATACATGCTTTAGGAGAGTAGGGGGGTCAGTCAGGACCAGTGGTTGAGACGGAGGGCTGCACAGCTTCGTTGCTGAAAGTGCTGCCGCCGCCCCCCGCCTCCTCCTGTGAGGGGGACTCATCCTCGTTCTGGCCCCGCGAGGTGACGGTGGTCTCTGGGGAGGCGCTGTGAGAGACCTCCTGGGGGGCGCAGCCAGGGTGGTTCTTGCGGAAGTGCTGGTTGAGGATGGCTTGGAAGGGGAAGCTCTTGCCGCACACATGGCAGTGGAAGGGCTTGTTGCCGGTGTGCTTGCGGATGTGGTACTCCAGCTGGTCCTTGCGCGTGTACTTCTTGCCACAGATGCGGCACACGAAGGGTGTGATGCCCATGTGCAGCCGCATGTGGCGGTCCAGGCTGCCCTTCTGGTTGAAGGACTTGCAGCAGTAGATGCAGGTCAGGCGTGGGTTGTAGCGGAACCAGCGGTCGCCCACCTGCTCACGGAGGTACTCCTCGTAGCCGCCCATGTCGAACACTTTCTGCTCCTCGCCCTGCACAGGGACACAGGAGAGGGGAGCTCAGCTGCACATGCAACACAAGTCAGCTCTGctgcttttctttccc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU180350 lncRNA upstream 5166 4102262 ~ 4103856 (+) True G143403
TU180325 lncRNA upstream 19749 4084099 ~ 4089273 (+) True G143380
TU180298 lncRNA upstream 202101 3906593 ~ 3906921 (+) True G143356
TU180232 lncRNA upstream 418829 3689158 ~ 3690193 (+) True G143302
TU180159 lncRNA upstream 520917 3581082 ~ 3588105 (+) True G143237
TU180352 lncRNA downstream 3606 4113261 ~ 4113488 (+) True G143405
TU180361 lncRNA downstream 23620 4133275 ~ 4133909 (+) True G143414
TU180364 lncRNA downstream 23800 4133455 ~ 4133909 (+) False G143414
TU180391 lncRNA downstream 108382 4218037 ~ 4238860 (+) True G143440
TU180401 lncRNA downstream 142054 4251709 ~ 4252089 (+) True G143447
AMCG00004817 mRNA upstream 8570 4090612 ~ 4100452 (+) True AMCG00004817
AMCG00004818 mRNA upstream 29433 4053649 ~ 4079589 (+) True AMCG00004818
AMCG00004814 mRNA upstream 84637 4021807 ~ 4024385 (+) True AMCG00004814
AMCG00004815 mRNA upstream 87484 4004368 ~ 4021538 (+) True AMCG00004815
AMCG00004813 mRNA upstream 111776 3960595 ~ 3997246 (+) True AMCG00004813
AMCG00004816 mRNA downstream 18571 4128226 ~ 4132115 (+) True AMCG00004816
AMCG00004822 mRNA downstream 54098 4163753 ~ 4191197 (+) True AMCG00004822
AMCG00004821 mRNA downstream 115252 4224907 ~ 4225812 (+) True AMCG00004821
AMCG00004826 mRNA downstream 180154 4289809 ~ 4301784 (+) True AMCG00004826
AMCG00004825 mRNA downstream 201113 4310768 ~ 4318334 (+) True AMCG00004825
TU180311 other upstream 159185 3949426 ~ 3949837 (+) True G143366
TU180140 other upstream 713864 3377815 ~ 3395158 (+) True AMCG00004793
TU180082 other upstream 984540 3123081 ~ 3124482 (+) True AMCG00004788
TU180081 other upstream 984540 3123223 ~ 3124482 (+) False AMCG00004788
TU179967 other upstream 1549942 2548587 ~ 2559080 (+) True G143075
TU180426 other downstream 262054 4371709 ~ 4372089 (+) True G143471
TU180621 other downstream 1314048 5423703 ~ 5424121 (+) True G143626
TU180912 other downstream 3619734 7729389 ~ 7731000 (+) False AMCG00004870
TU181952 other downstream 7553026 11662681 ~ 11663368 (+) True G144677
TU182286 other downstream 8670925 12780580 ~ 12781170 (+) True G144940

Expression Profile