RNA id: TU180501


Basic Information

Item Value
RNA id TU180501
length 840
lncRNA type sense_over
GC content 0.33
exon number 2
gene id G143528
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 4791690 ~ 4858146 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgcatcaatgaaaacaaatgtacaataaatcCTTTCATgcagaaaaccaacaaaaacacatactgtGTAAATTAAATAGAACAGCTACAGTTTTGTCAGTAATTGCATACACACAAATGTAACTTGTAATGAAACTAcgttattcattttaaaggtaTTAGGCACTTTACACAACCACTCAATTGCATGCGTTTTAATATGTGTGGCTATGTGTTATTTACTTtaagaaaagtaatttatatAGTACATATTAAAGTTATCAGATAAATTAGGCAATCAGTCATATGAAAGCAATAGTCCAGGATTACCAGTAGCAGCCATTTCATTGCATatgcacaacaaaacaatgccACTGAACGGATGGGCTGTTTAAGTACTTTTAGTGAAGAATATACGTATTTCCCCCTAAATGCCAGACTTTACATATAgcttaatgaaaatgtacaccTTCTGCATGTTGTGTCCTGTCGGTGTAGTGAAGCAGAATAAATGAGGGTTGTGAATCTTGAAAGGgattaacatttgaataaaatgttcagCTTTCATGTGATTGTTGGCATGCGGTCGAAACTGAGGAAATGATTGCCTCCAGTCAGATTTTTGCTCTATTAAATCAGACTAAAACCCTTGTTTGATACTCTCCTCATGATCCCTTCACAAATCACGGTGTGCTCCTGAAGAAGAAGTGAAAGCGTAATAGGTGTAAAATATGGATATGCACAtgttttccctctctgtcttgGTGCTGAAAATATAACCCAGCAAAACCTTGtcaaaataatgaacaatttgtttattattattattattattattattattattattattattattaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180381 lncRNA downstream 600409 4187958 ~ 4191281 (-) True G143430
TU180353 lncRNA downstream 682834 4107519 ~ 4108856 (-) True G143406
TU180346 lncRNA downstream 693274 4094650 ~ 4098416 (-) True G143400
TU180342 lncRNA downstream 702697 4085446 ~ 4088993 (-) True G143396
TU180317 lncRNA downstream 819145 3972316 ~ 3972545 (-) True G143372
TU180512 lncRNA upstream 127242 4985388 ~ 4985694 (-) True G143539
TU180521 lncRNA upstream 158701 5016847 ~ 5017631 (-) True G143544
TU180607 lncRNA upstream 469569 5327715 ~ 5402341 (-) True G143619
TU180787 lncRNA upstream 1730005 6588151 ~ 6588746 (-) True G143759
TU180799 lncRNA upstream 1776574 6634720 ~ 6634963 (-) True G143771
AMCG00004831 mRNA downstream 65221 4707092 ~ 4726469 (-) True AMCG00004831
AMCG00004830 mRNA downstream 105367 4677473 ~ 4686323 (-) True AMCG00004830
AMCG00004828 mRNA downstream 200260 4576416 ~ 4591430 (-) True AMCG00004828
AMCG00004829 mRNA downstream 308910 4439540 ~ 4482780 (-) True AMCG00004829
AMCG00004824 mRNA downstream 431754 4324963 ~ 4359936 (-) True AMCG00004824
AMCG00004836 mRNA upstream 211109 5069255 ~ 5094212 (-) True AMCG00004836
AMCG00004835 mRNA upstream 296452 5154598 ~ 5158802 (-) True AMCG00004835
AMCG00004837 mRNA upstream 356182 5214328 ~ 5215407 (-) True AMCG00004837
AMCG00004838 mRNA upstream 383884 5242030 ~ 5258280 (-) True AMCG00004838
AMCG00004842 mRNA upstream 430672 5288818 ~ 5291353 (-) True AMCG00004842
TU180357 other downstream 675276 4113747 ~ 4116414 (-) False AMCG00004819
TU180096 other downstream 1591523 3138857 ~ 3200167 (-) False AMCG00004790
TU180095 other downstream 1631017 3138857 ~ 3160673 (-) False AMCG00004790
TU180047 other downstream 2081686 2709554 ~ 2710004 (-) True G143145
TU179730 other downstream 4145311 644004 ~ 646379 (-) True AMCG00004763
TU180667 other upstream 878663 5736809 ~ 5783184 (-) True G143659
TU181155 other upstream 3495843 8353989 ~ 8377001 (-) True G144050
TU181227 other upstream 3978214 8836360 ~ 8840988 (-) False AMCG00004894
TU181238 other upstream 4014739 8872885 ~ 8906594 (-) True G144115
TU182156 other upstream 7295979 12154125 ~ 12156378 (-) False AMCG00005011

Expression Profile