RNA id: TU180521


Basic Information

Item Value
RNA id TU180521
length 472
lncRNA type inter_gene
GC content 0.54
exon number 2
gene id G143544
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 5016847 ~ 5017631 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTGTGTGAAAGGTTTGGGGGTTGGTGGCTGTCAGACAGAGTGAAGTCAAATGAATCCTCAAACACCTCATCCCCCAGGTGTCTGTAGTAGATGAGCCCCTGAAACAGGTCTCTCTGTAGGAAGGTCTTCACTGGGATCCCTGGCTGCTGTGGGGAGTGTTTCTTGATGATCTCTCCAGCTAGCGGCAGCCTGGTGAGTGTGTACAATATGTAGTCATCGCTGGAGTCAAGGTCAGAGGCCATCAGCATGTACTCCTCTACCAGCACGCTACCCCCCTCTTCAACCTCGAAGGCCACGTTGTTGATGAGAAATGGGGGCGTGTCGTCCTTGGGGAGGATGTTGATGGGGAACTTGTGCCTCACACTGTGACGCCCGTCCGAGATGCGGAAGACGATGTAGTCTTTGGTGGTGTCGCTGTCCGAATGGTGATACCGCACCGCCCCGTCCTTGATGTCTTGAACTTTGAACATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180512 lncRNA downstream 31153 4985388 ~ 4985694 (-) True G143539
TU180501 lncRNA downstream 158701 4791690 ~ 4858146 (-) True G143528
TU180381 lncRNA downstream 825566 4187958 ~ 4191281 (-) True G143430
TU180353 lncRNA downstream 907991 4107519 ~ 4108856 (-) True G143406
TU180346 lncRNA downstream 918431 4094650 ~ 4098416 (-) True G143400
TU180607 lncRNA upstream 310084 5327715 ~ 5402341 (-) True G143619
TU180787 lncRNA upstream 1570520 6588151 ~ 6588746 (-) True G143759
TU180799 lncRNA upstream 1617089 6634720 ~ 6634963 (-) True G143771
TU180801 lncRNA upstream 1617427 6635058 ~ 6635410 (-) True G143773
TU180810 lncRNA upstream 1778302 6795933 ~ 6796223 (-) True G143782
AMCG00004832 mRNA downstream 182547 4832401 ~ 4834300 (-) True AMCG00004832
AMCG00004831 mRNA downstream 290378 4707092 ~ 4726469 (-) True AMCG00004831
AMCG00004830 mRNA downstream 330524 4677473 ~ 4686323 (-) True AMCG00004830
AMCG00004828 mRNA downstream 425417 4576416 ~ 4591430 (-) True AMCG00004828
AMCG00004829 mRNA downstream 534067 4439540 ~ 4482780 (-) True AMCG00004829
AMCG00004836 mRNA upstream 51624 5069255 ~ 5094212 (-) True AMCG00004836
AMCG00004835 mRNA upstream 136967 5154598 ~ 5158802 (-) True AMCG00004835
AMCG00004837 mRNA upstream 196697 5214328 ~ 5215407 (-) True AMCG00004837
AMCG00004838 mRNA upstream 224399 5242030 ~ 5258280 (-) True AMCG00004838
AMCG00004842 mRNA upstream 271187 5288818 ~ 5291353 (-) True AMCG00004842
TU180357 other downstream 900433 4113747 ~ 4116414 (-) False AMCG00004819
TU180096 other downstream 1816680 3138857 ~ 3200167 (-) False AMCG00004790
TU180095 other downstream 1856174 3138857 ~ 3160673 (-) False AMCG00004790
TU180047 other downstream 2306843 2709554 ~ 2710004 (-) True G143145
TU179730 other downstream 4370468 644004 ~ 646379 (-) True AMCG00004763
TU180667 other upstream 719178 5736809 ~ 5783184 (-) True G143659
TU181155 other upstream 3336358 8353989 ~ 8377001 (-) True G144050
TU181227 other upstream 3818729 8836360 ~ 8840988 (-) False AMCG00004894
TU181238 other upstream 3855254 8872885 ~ 8906594 (-) True G144115
TU182156 other upstream 7136494 12154125 ~ 12156378 (-) False AMCG00005011

Expression Profile