RNA id: TU180607


Basic Information

Item Value
RNA id TU180607
length 246
lncRNA type read_through
GC content 0.39
exon number 2
gene id G143619
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 5327715 ~ 5402341 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aacacatcaactttgaggacaagatgttcacttgctgcctaatatatcccacccactgacaggtgccatgataacgagattatcagtgttattcacttcacctgtcagtggtcataatgttatggctgatcggtgtatgtatatacagtgagggaaaaaagtatttgatcccctgctgattttgtacgtttgcccactgacaaagaaatgatcagtctataattttaatggtaggtgtattttaac

Function

GO: NA

KEGG:

id description
ko00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180521 lncRNA downstream 310084 5016847 ~ 5017631 (-) True G143544
TU180512 lncRNA downstream 342021 4985388 ~ 4985694 (-) True G143539
TU180501 lncRNA downstream 469569 4791690 ~ 4858146 (-) True G143528
TU180381 lncRNA downstream 1136434 4187958 ~ 4191281 (-) True G143430
TU180353 lncRNA downstream 1218859 4107519 ~ 4108856 (-) True G143406
TU180787 lncRNA upstream 1185810 6588151 ~ 6588746 (-) True G143759
TU180799 lncRNA upstream 1232379 6634720 ~ 6634963 (-) True G143771
TU180801 lncRNA upstream 1232717 6635058 ~ 6635410 (-) True G143773
TU180810 lncRNA upstream 1393592 6795933 ~ 6796223 (-) True G143782
TU180876 lncRNA upstream 2203699 7606040 ~ 7666482 (-) False G143834
AMCG00004842 mRNA downstream 36362 5288818 ~ 5291353 (-) True AMCG00004842
AMCG00004838 mRNA downstream 69435 5242030 ~ 5258280 (-) True AMCG00004838
AMCG00004837 mRNA downstream 112308 5214328 ~ 5215407 (-) True AMCG00004837
AMCG00004835 mRNA downstream 168913 5154598 ~ 5158802 (-) True AMCG00004835
AMCG00004836 mRNA downstream 233503 5069255 ~ 5094212 (-) True AMCG00004836
AMCG00004848 mRNA upstream 312609 5714950 ~ 5730640 (-) True AMCG00004848
AMCG00004853 mRNA upstream 507873 5910214 ~ 5914976 (-) True AMCG00004853
AMCG00004854 mRNA upstream 514425 5916766 ~ 5939825 (-) True AMCG00004854
AMCG00004861 mRNA upstream 844648 6246989 ~ 6341878 (-) True AMCG00004861
AMCG00004858 mRNA upstream 1100147 6502488 ~ 6509316 (-) True AMCG00004858
TU180357 other downstream 1211301 4113747 ~ 4116414 (-) False AMCG00004819
TU180096 other downstream 2127548 3138857 ~ 3200167 (-) False AMCG00004790
TU180095 other downstream 2167042 3138857 ~ 3160673 (-) False AMCG00004790
TU180047 other downstream 2617711 2709554 ~ 2710004 (-) True G143145
TU179730 other downstream 4681336 644004 ~ 646379 (-) True AMCG00004763
TU180667 other upstream 334468 5736809 ~ 5783184 (-) True G143659
TU181155 other upstream 2951648 8353989 ~ 8377001 (-) True G144050
TU181227 other upstream 3434019 8836360 ~ 8840988 (-) False AMCG00004894
TU181238 other upstream 3470544 8872885 ~ 8906594 (-) True G144115
TU182156 other upstream 6751784 12154125 ~ 12156378 (-) False AMCG00005011

Expression Profile