RNA id: TU180787


Basic Information

Item Value
RNA id TU180787
length 596
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G143759
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 6588151 ~ 6588746 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atttcagtcttTCACGGTGTAGTGTGtaacaattgttttcttggtgactatggtcccagctgccttgagatcattaacaagatcctcccgtgtaggtGTGGGCCGATTCCTcacgttctcatgatcattgaaactccacgaggtgagatcttgcatggagccccagaccaagggagactgacagttattttgtgtttcttcgatttgcgaataatcgcaccaactgttgtcaccttctcaccaagctgcttggcgatggtcttgtagcccattccagccttgtgtaggtctacagtcttgtccctgacatccttggacagctctttggtcttggccagggtagagagtttggaatctgattgattgattgcttctgtggacaggtgtcttttatactccctttaagagagtgctcctaatctcagctcgttacctgtataatatacacctgggagccagaaatcttgctgatttataggggatcaaatacttatttccctcattaacatgcaaatcaatttataactttttttaaatgtgtttttctggatttttttgttgttattctgtctctcactgttaaaatacacctacca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180607 lncRNA downstream 1185810 5327715 ~ 5402341 (-) True G143619
TU180521 lncRNA downstream 1570520 5016847 ~ 5017631 (-) True G143544
TU180512 lncRNA downstream 1602457 4985388 ~ 4985694 (-) True G143539
TU180501 lncRNA downstream 1730005 4791690 ~ 4858146 (-) True G143528
TU180381 lncRNA downstream 2396870 4187958 ~ 4191281 (-) True G143430
TU180799 lncRNA upstream 45974 6634720 ~ 6634963 (-) True G143771
TU180801 lncRNA upstream 46312 6635058 ~ 6635410 (-) True G143773
TU180810 lncRNA upstream 207187 6795933 ~ 6796223 (-) True G143782
TU180876 lncRNA upstream 1017294 7606040 ~ 7666482 (-) False G143834
TU180877 lncRNA upstream 1017294 7606040 ~ 7666482 (-) True G143834
AMCG00004859 mRNA downstream 8149 6564339 ~ 6580002 (-) True AMCG00004859
AMCG00004860 mRNA downstream 28801 6540191 ~ 6559350 (-) True AMCG00004860
AMCG00004858 mRNA downstream 78835 6502488 ~ 6509316 (-) True AMCG00004858
AMCG00004861 mRNA downstream 246273 6246989 ~ 6341878 (-) True AMCG00004861
AMCG00004854 mRNA downstream 648326 5916766 ~ 5939825 (-) True AMCG00004854
AMCG00004857 mRNA upstream 1474 6590220 ~ 6609157 (-) True AMCG00004857
AMCG00004866 mRNA upstream 947984 7536730 ~ 7562285 (-) True AMCG00004866
AMCG00004865 mRNA upstream 984445 7573191 ~ 7582511 (-) True AMCG00004865
AMCG00004875 mRNA upstream 1025607 7614353 ~ 7616498 (-) True AMCG00004875
AMCG00004872 mRNA upstream 1100280 7689026 ~ 7699315 (-) True AMCG00004872
TU180667 other downstream 804967 5736809 ~ 5783184 (-) True G143659
TU180357 other downstream 2471737 4113747 ~ 4116414 (-) False AMCG00004819
TU180096 other downstream 3387984 3138857 ~ 3200167 (-) False AMCG00004790
TU180095 other downstream 3427478 3138857 ~ 3160673 (-) False AMCG00004790
TU180047 other downstream 3878147 2709554 ~ 2710004 (-) True G143145
TU181155 other upstream 1765243 8353989 ~ 8377001 (-) True G144050
TU181227 other upstream 2247614 8836360 ~ 8840988 (-) False AMCG00004894
TU181238 other upstream 2284139 8872885 ~ 8906594 (-) True G144115
TU182156 other upstream 5565379 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other upstream 5565379 12154125 ~ 12156378 (-) True AMCG00005011

Expression Profile