RNA id: TU180799


Basic Information

Item Value
RNA id TU180799
length 244
lncRNA type inter_gene
GC content 0.28
exon number 1
gene id G143771
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 6634720 ~ 6634963 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATAGAATGTGAGATGTCCCAGATTCAATTTGATCGACATGCTCTGTTTGTCCATGATCACATACATATTCCTGATCTTCAAATAGTAATGTTTGTAGGAGccaatttatgtattaataaacatttataataatatgttttgtttaacttgtatttctgtatgttgcattgagtatacataattcaattatttttcatttgataacttgatcattaatgtaattgataatTGGGTGAGAAAGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180787 lncRNA downstream 45974 6588151 ~ 6588746 (-) True G143759
TU180607 lncRNA downstream 1232379 5327715 ~ 5402341 (-) True G143619
TU180521 lncRNA downstream 1617089 5016847 ~ 5017631 (-) True G143544
TU180512 lncRNA downstream 1649026 4985388 ~ 4985694 (-) True G143539
TU180501 lncRNA downstream 1776574 4791690 ~ 4858146 (-) True G143528
TU180801 lncRNA upstream 95 6635058 ~ 6635410 (-) True G143773
TU180810 lncRNA upstream 160970 6795933 ~ 6796223 (-) True G143782
TU180876 lncRNA upstream 971077 7606040 ~ 7666482 (-) False G143834
TU180877 lncRNA upstream 971077 7606040 ~ 7666482 (-) True G143834
TU180882 lncRNA upstream 986203 7621166 ~ 7624705 (-) True G143839
AMCG00004857 mRNA downstream 25563 6590220 ~ 6609157 (-) True AMCG00004857
AMCG00004859 mRNA downstream 54718 6564339 ~ 6580002 (-) True AMCG00004859
AMCG00004860 mRNA downstream 75370 6540191 ~ 6559350 (-) True AMCG00004860
AMCG00004858 mRNA downstream 125404 6502488 ~ 6509316 (-) True AMCG00004858
AMCG00004861 mRNA downstream 292842 6246989 ~ 6341878 (-) True AMCG00004861
AMCG00004866 mRNA upstream 901767 7536730 ~ 7562285 (-) True AMCG00004866
AMCG00004865 mRNA upstream 938228 7573191 ~ 7582511 (-) True AMCG00004865
AMCG00004875 mRNA upstream 979390 7614353 ~ 7616498 (-) True AMCG00004875
AMCG00004872 mRNA upstream 1054063 7689026 ~ 7699315 (-) True AMCG00004872
AMCG00004873 mRNA upstream 1098934 7733897 ~ 7741545 (-) True AMCG00004873
TU180667 other downstream 851536 5736809 ~ 5783184 (-) True G143659
TU180357 other downstream 2518306 4113747 ~ 4116414 (-) False AMCG00004819
TU180096 other downstream 3434553 3138857 ~ 3200167 (-) False AMCG00004790
TU180095 other downstream 3474047 3138857 ~ 3160673 (-) False AMCG00004790
TU180047 other downstream 3924716 2709554 ~ 2710004 (-) True G143145
TU181155 other upstream 1719026 8353989 ~ 8377001 (-) True G144050
TU181227 other upstream 2201397 8836360 ~ 8840988 (-) False AMCG00004894
TU181238 other upstream 2237922 8872885 ~ 8906594 (-) True G144115
TU182156 other upstream 5519162 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other upstream 5519162 12154125 ~ 12156378 (-) True AMCG00005011

Expression Profile