RNA id: TU180810


Basic Information

Item Value
RNA id TU180810
length 291
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G143782
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 6795933 ~ 6796223 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

caagacgcatctcttccgacagcacttgtaatattagtcctctatccctgctagatagcacttcagcttattatgctcctcgcgttcttgattgttttcctccttgctccctttcccgtagccctcgtctgtaaccctacatcttgacagcacttagctttcaccgtctaggatgtaggaagtctcttactgtacttgtgtaaattgtaaattggaatttgtaaaatgtattattttgaattgctatgttttagctaagttgaatttgtaatgattgatgccttgtacttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180801 lncRNA downstream 160523 6635058 ~ 6635410 (-) True G143773
TU180799 lncRNA downstream 160970 6634720 ~ 6634963 (-) True G143771
TU180787 lncRNA downstream 207187 6588151 ~ 6588746 (-) True G143759
TU180607 lncRNA downstream 1393592 5327715 ~ 5402341 (-) True G143619
TU180521 lncRNA downstream 1778302 5016847 ~ 5017631 (-) True G143544
TU180876 lncRNA upstream 809817 7606040 ~ 7666482 (-) False G143834
TU180877 lncRNA upstream 809817 7606040 ~ 7666482 (-) True G143834
TU180882 lncRNA upstream 824943 7621166 ~ 7624705 (-) True G143839
TU180900 lncRNA upstream 913656 7709879 ~ 7710575 (-) True G143853
TU180906 lncRNA upstream 922037 7718260 ~ 7718802 (-) True G143857
AMCG00004857 mRNA downstream 186776 6590220 ~ 6609157 (-) True AMCG00004857
AMCG00004859 mRNA downstream 215931 6564339 ~ 6580002 (-) True AMCG00004859
AMCG00004860 mRNA downstream 236583 6540191 ~ 6559350 (-) True AMCG00004860
AMCG00004858 mRNA downstream 286617 6502488 ~ 6509316 (-) True AMCG00004858
AMCG00004861 mRNA downstream 454055 6246989 ~ 6341878 (-) True AMCG00004861
AMCG00004866 mRNA upstream 740507 7536730 ~ 7562285 (-) True AMCG00004866
AMCG00004865 mRNA upstream 776968 7573191 ~ 7582511 (-) True AMCG00004865
AMCG00004875 mRNA upstream 818130 7614353 ~ 7616498 (-) True AMCG00004875
AMCG00004872 mRNA upstream 892803 7689026 ~ 7699315 (-) True AMCG00004872
AMCG00004873 mRNA upstream 937674 7733897 ~ 7741545 (-) True AMCG00004873
TU180667 other downstream 1012749 5736809 ~ 5783184 (-) True G143659
TU180357 other downstream 2679519 4113747 ~ 4116414 (-) False AMCG00004819
TU180096 other downstream 3595766 3138857 ~ 3200167 (-) False AMCG00004790
TU180095 other downstream 3635260 3138857 ~ 3160673 (-) False AMCG00004790
TU180047 other downstream 4085929 2709554 ~ 2710004 (-) True G143145
TU181155 other upstream 1557766 8353989 ~ 8377001 (-) True G144050
TU181227 other upstream 2040137 8836360 ~ 8840988 (-) False AMCG00004894
TU181238 other upstream 2076662 8872885 ~ 8906594 (-) True G144115
TU182156 other upstream 5357902 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other upstream 5357902 12154125 ~ 12156378 (-) True AMCG00005011

Expression Profile