RNA id: TU180909


Basic Information

Item Value
RNA id TU180909
length 845
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G143860
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 7722188 ~ 7726165 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCACAGCCCGGGCGCTTTTTTGAGGCACAAAGCGGAAGCGTACGGACCCCGAAGCACAAGCGAGAGAAGGAGCTGTCGACCCACCTTTTGTCTGGAAACTGCACCCGTTCACACTGAAAGCTAACATGTCGGGATCATCCAACATCAACTCCATGAAGAAGGTGGTGCAGCAGCTGCGTTTCGAGGCCAGCATCAACCGGGTGAAGgtgtCACAAGCAGCTGCAGACCTCCAGCAGTTTTGCATCCAGAATGCACACCACGACCCTTTACTGACCGGGGTGTCCTCCAGCACCAACCCGTTCAGGACACAGAAAGTTTGCTCATTTTTGtaactgttttgtgtgttaattTAAGAGTTTTAACCGATCACTGTGAAGCAGAAACACCGAGTCAGATGGGAGTAATTTCacagatcttttttttaaatctgcttaTGGATACTTAATTGCTTTCAAAGTACCTTTTTTTATAgttgccaatttttttttcttattgtacaTGTGCCTTTTTCTTACAAATTAGACTCTGGTGTGATGTGTTCATTTCAATCTACTGAAAATTGTGTTGAATAGTCCCAATACATGCCCTTAGTGAGAGCATTGATGGAAGGATGGATGGGATGTTACCTAAAGACTGACTGAATCACTAAACtcttcaaagttttttttttttttcccaattacTGCAAGAATACAATGCTAATCTCATGCCTTGTACAACTGTCTTTTTGTACTCTTTAaaactggatttgttttttattttattttgaaaagcaggaaataaaaatgatccTTCATCTGTCTTGTTTAAAGATGTAGTATATATTGAGCACTGTAGAAATAAA

Function

GO:

id name namespace
GO:0070003 threonine-type peptidase activity molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function

KEGG:

id description
ko03050 Proteasome
ko03018 RNA degradation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180908 lncRNA downstream 1302 7720174 ~ 7720886 (-) True G143859
TU180906 lncRNA downstream 3386 7718260 ~ 7718802 (-) True G143857
TU180900 lncRNA downstream 11613 7709879 ~ 7710575 (-) True G143853
TU180876 lncRNA downstream 55706 7606040 ~ 7666482 (-) False G143834
TU181007 lncRNA upstream 131185 7857350 ~ 7858712 (-) True G143922
TU181182 lncRNA upstream 801366 8527531 ~ 8528907 (-) True G144072
TU181252 lncRNA upstream 1190326 8916491 ~ 8921153 (-) True G144124
TU181271 lncRNA upstream 1414454 9140619 ~ 9141972 (-) True G144142
TU181346 lncRNA upstream 1691367 9417532 ~ 9418417 (-) True G144205
AMCG00004872 mRNA downstream 22873 7689026 ~ 7699315 (-) True AMCG00004872
AMCG00004875 mRNA downstream 105690 7614353 ~ 7616498 (-) True AMCG00004875
AMCG00004865 mRNA downstream 139677 7573191 ~ 7582511 (-) True AMCG00004865
AMCG00004866 mRNA downstream 159903 7536730 ~ 7562285 (-) True AMCG00004866
AMCG00004857 mRNA downstream 1113031 6590220 ~ 6609157 (-) True AMCG00004857
AMCG00004873 mRNA upstream 7732 7733897 ~ 7741545 (-) True AMCG00004873
AMCG00004874 mRNA upstream 35662 7761827 ~ 7763619 (-) True AMCG00004874
AMCG00004886 mRNA upstream 74685 7800850 ~ 7818689 (-) True AMCG00004886
AMCG00004885 mRNA upstream 95680 7821845 ~ 7830604 (-) True AMCG00004885
AMCG00004887 mRNA upstream 111765 7837930 ~ 7852819 (-) True AMCG00004887
TU180667 other downstream 1939004 5736809 ~ 5783184 (-) True G143659
TU180357 other downstream 3605774 4113747 ~ 4116414 (-) False AMCG00004819
TU180096 other downstream 4522021 3138857 ~ 3200167 (-) False AMCG00004790
TU180095 other downstream 4561515 3138857 ~ 3160673 (-) False AMCG00004790
TU180047 other downstream 5012184 2709554 ~ 2710004 (-) True G143145
TU181155 other upstream 627824 8353989 ~ 8377001 (-) True G144050
TU181227 other upstream 1110195 8836360 ~ 8840988 (-) False AMCG00004894
TU181238 other upstream 1146720 8872885 ~ 8906594 (-) True G144115
TU182156 other upstream 4427960 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other upstream 4427960 12154125 ~ 12156378 (-) True AMCG00005011

Expression Profile