RNA id: TU181055



Basic Information


Item Value
RNA id TU181055
length 284
lncRNA type inter_gene
GC content 0.60
exon number 2
gene id G143962
representative True

Chromosome Information


Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 7978646 ~ 8049310 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TCTGCACGGCTTGCTCTTTACCTTCACGGTTCCCCCCATTAGCCGCAACGCCGACGGTCGTCCCTTTCTTGGATCTCTTGCCCCGAAGTTTTGCTAGTAATGTCCGCCGCAGAGGATCAGCCATTCCTCTTCGCCCGGTGCTGCTCCGGTGTCAGCGGCTGCTCTCCGGCGGGTTGAACGCCACTCGGATGACCTTTCTCGCCGTCAAAAGTCCCCTCGGCTCCGCACAGCTCTCCATTCTCCACTGTGTGCGCTCTctggagctgtgtgtgtttctctctctc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU181008 lncRNA upstream 104212 7873613 ~ 7874434 (+) True G143923
TU180890 lncRNA upstream 286382 7672816 ~ 7692264 (+) False AMCG00004868
TU180866 lncRNA upstream 368822 7608901 ~ 7609824 (+) False AMCG00004864
TU180800 lncRNA upstream 1343236 6635058 ~ 6635410 (+) True G143772
TU180738 lncRNA upstream 1477925 6500236 ~ 6500721 (+) True G143721
TU181094 lncRNA downstream 51716 8101026 ~ 8101339 (+) True G143997
TU181198 lncRNA downstream 744367 8793677 ~ 8825780 (+) True G144082
TU181233 lncRNA downstream 802935 8852245 ~ 8852446 (+) True G144111
TU181264 lncRNA downstream 1091332 9140642 ~ 9141904 (+) True G144136
TU181265 lncRNA downstream 1096144 9145454 ~ 9145853 (+) True G144137
AMCG00004882 mRNA upstream 42519 7907176 ~ 7936127 (+) True AMCG00004882
AMCG00004867 mRNA upstream 107793 7742678 ~ 7870853 (+) True AMCG00004867
AMCG00004870 mRNA upstream 244587 7718273 ~ 7734059 (+) True AMCG00004870
AMCG00004871 mRNA upstream 261168 7701969 ~ 7717478 (+) True AMCG00004871
AMCG00004868 mRNA upstream 286285 7672876 ~ 7692361 (+) True AMCG00004868
AMCG00004881 mRNA downstream 43501 8092811 ~ 8094461 (+) True AMCG00004881
AMCG00004895 mRNA downstream 239918 8289228 ~ 8294685 (+) True AMCG00004895
AMCG00004896 mRNA downstream 249147 8298457 ~ 8323043 (+) True AMCG00004896
AMCG00004897 mRNA downstream 284461 8333771 ~ 8345890 (+) True AMCG00004897
AMCG00004891 mRNA downstream 410040 8459350 ~ 8468770 (+) True AMCG00004891
TU180912 other upstream 247646 7729389 ~ 7731000 (+) False AMCG00004870
TU180621 other upstream 2554525 5423703 ~ 5424121 (+) True G143626
TU180426 other upstream 3606557 4371709 ~ 4372089 (+) True G143471
TU180351 other upstream 3868991 4109022 ~ 4109655 (+) True G143404
TU180311 other upstream 4028809 3949426 ~ 3949837 (+) True G143366
TU181952 other downstream 3613371 11662681 ~ 11663368 (+) True G144677
TU182286 other downstream 4731270 12780580 ~ 12781170 (+) True G144940
TU183002 other downstream 7334933 15384243 ~ 15384612 (+) False AMCG00005105
TU183561 other downstream 9715947 17765257 ~ 17771525 (+) True G145932
TU184056 other downstream 11530263 19579573 ~ 19579807 (+) True G146305

Expression Profile