RNA id: TU181065


Basic Information

Item Value
RNA id TU181065
length 2466
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G143970
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 8009531 ~ 8012018 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTATGAATTTTTAGTTTGCAGTATATGCTTACTGTTACATAGAGCAAATATGTATGCATCGCTTTTGTATTCTTAAAGCTGGTAAGATCAACAAAACAGGCAATAAATTAGGGATTGGATTGTaactttatttaacaaaagGGATGCGTCCTCCCAGACAGTCAGTATTTAAGATCAACAAAGAAGTTGTTAGTTGACACATCTGTATGCACTGATGTCTTTGGCACAAAACTAGGCAAACTAAAccatctaaaaacaaacaatcctgAGGAAGATCTAATTAAAACAGGTCACGGCACtgcttacaaatacacaaagtCACTGAGATCATGGATTTTTGAAACTCACTGTAATATGGTCATGCTTGTGAATGTACAGTTGGATGTGaagttatacttttttttttttttttttgcaaaaggGAATAGATTAGTCTgctagtcagtcagtgtcagtccTAAGGCAGTCCTTTCCCATTAGCTAAAAACCATGCCACATAAAACAACAGTTAAGATTCACATGTTGGCGTTTCATCCTATTGATATATTCTGCTGGCAACTTTTGATAAACTGATGCCCAAGAATTTTGTATCAATAGACTGAGATGCCAGGACACTAACTGTGTCTCGCACATCTGCTCAGTGTTTCTCTCCATGAGCTCTAGATGGGATACACAGCAAACTGTGGTATTATTGTTCTTTCTGCCAAACGTCTCCCGTAAAATATACAGCTCATGTCACAAATTACCATTTTTACTGCTGGCCCTCTTGAACCCGTGCCAAACTGTATGATATCATTATCATAAATTACACCAAAAATGTATGGAGCAAAAAGTAACTGGGACTGTTTACCAGCTAACAAGCTTCTTCCAAAATAATTCCTTCCACATTTCATCACCATAAAATTTGCAAATGGTACTGAACAGTCATCATAGTTTATAAGAAATATTAAGTTATAGATATTCAGAACATGTTTTCCTTCAGAGAGGAGATTTTGTATTGAGTTTCTGCTCTTCTctatttaattgaagtaatggaaaaaaaatctgatttaacTAGTCATTATCACAGATCCATCTtgacaacagtaaaacaaatgttgtcCGTGAAATTTTAGAAATGTGTACGTTTCCGATTTGATGACCTGTGTTATTCTAAATTGATTTGTGGAAGTTGAGAAAAGTGTGCACGTCTGTTGGcgattttcttttcatcttttaCTGGTCATGTTCAGATGGTGTAAACAAATATTCACGTACACCATACAAGTTATTTGCTCATATTGACACTGCCCAGGGGCCGATCTGAGTCTTTGATACTGATTTCAGGGCCCGCTCCGGTAATTCCTCCTTGTGTGCTGAAGGATAAACAGAACCAGTGGCTCCAGTTTCCCAGGAAAATGTTTATCCTTACTGCTCTCCAAtcctgtctgttttttcttATATAAAGAGAAACAAGACTACAGTCCTGTCAAATAAAGAGGTGGGTAtcatctattttaaaatataatgatttatctaaaataaataattcatgttAAACATCaaagtttttcttcttccagttATTCACTATTATAGCTAGGAAGCACAGTGCAGTGGCACCTTTCAGGCAGTTTCACGGTCAGGTTACAAACTAGTAAAACAGAAAGCACTCGAAACAAACAGATAGGCGATGGCACAAAGAGAGATGGGAAACTGCGGTCTACAGAGGGACTTCCGCACTGATCTTTGATTGCCGTGGGAAGTGAAGTCTCTGCAGCTTCAGATCAGCTGGATGTAACAATTAGCACCACATCACAGCTGGGAATGAGAATTAACATTCTAGTTTGAGAAGATGCTGCATCGGTCTTGTAGAAGATACACTATTTCACAAATGTGTCTGCTACTGGAGAATTCCCCCTGCTTCTCAACAGCACTGGCacatattacacattaaaactgGAATGCCTAATAGGCCAAAGTAGTCTAAACATCcaagaaacaatacaattattaaaacaagaacaatttgATAGAAGTCTTCATCCATAGTCAGTGTTAATCAAGGGGTGGGGCTTTAAATCTGagattgtaattaatttgaatacagtGATTCTGCTAatagtctttatttttcttcttcagagcCTCAAGTGCATAGAAGTACTGTACATCTACTACATAGGACATTCAAAACTAATATGAAACCAATCAGTCCACCCTATTCATCAATATTTAGACAATCAGGAGCCCAGGAACTGACAAGCGGGGTTGAAAGCACAGGTATGGCTCAGATGGGCACGGGCCGCGGCACTGTACACCACCGTGACCTCATTGCCAGTCCGCTGGAGATGTCTGGGGTGTGGCTCAGATCTCCATTTTCTTGTTGATGAGAATAGAGCAACAGGTGAGGGCCCCGtcagttttctctttttctgcaTTCATGACGGGTATCAACATGTGGTCCTTTAGCTTCtcaaaaacct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181008 lncRNA upstream 135097 7873613 ~ 7874434 (+) True G143923
TU180890 lncRNA upstream 317267 7672816 ~ 7692264 (+) False AMCG00004868
TU180866 lncRNA upstream 399707 7608901 ~ 7609824 (+) False AMCG00004864
TU180800 lncRNA upstream 1374121 6635058 ~ 6635410 (+) True G143772
TU180738 lncRNA upstream 1508810 6500236 ~ 6500721 (+) True G143721
TU181094 lncRNA downstream 89008 8101026 ~ 8101339 (+) True G143997
TU181198 lncRNA downstream 781659 8793677 ~ 8825780 (+) True G144082
TU181233 lncRNA downstream 840227 8852245 ~ 8852446 (+) True G144111
TU181264 lncRNA downstream 1128624 9140642 ~ 9141904 (+) True G144136
TU181265 lncRNA downstream 1133436 9145454 ~ 9145853 (+) True G144137
AMCG00004882 mRNA upstream 73404 7907176 ~ 7936127 (+) True AMCG00004882
AMCG00004867 mRNA upstream 138678 7742678 ~ 7870853 (+) True AMCG00004867
AMCG00004870 mRNA upstream 275472 7718273 ~ 7734059 (+) True AMCG00004870
AMCG00004871 mRNA upstream 292053 7701969 ~ 7717478 (+) True AMCG00004871
AMCG00004868 mRNA upstream 317170 7672876 ~ 7692361 (+) True AMCG00004868
AMCG00004881 mRNA downstream 80793 8092811 ~ 8094461 (+) True AMCG00004881
AMCG00004895 mRNA downstream 277210 8289228 ~ 8294685 (+) True AMCG00004895
AMCG00004896 mRNA downstream 286439 8298457 ~ 8323043 (+) True AMCG00004896
AMCG00004897 mRNA downstream 321753 8333771 ~ 8345890 (+) True AMCG00004897
AMCG00004891 mRNA downstream 447332 8459350 ~ 8468770 (+) True AMCG00004891
TU180912 other upstream 278531 7729389 ~ 7731000 (+) False AMCG00004870
TU180621 other upstream 2585410 5423703 ~ 5424121 (+) True G143626
TU180426 other upstream 3637442 4371709 ~ 4372089 (+) True G143471
TU180351 other upstream 3899876 4109022 ~ 4109655 (+) True G143404
TU180311 other upstream 4059694 3949426 ~ 3949837 (+) True G143366
TU181952 other downstream 3650663 11662681 ~ 11663368 (+) True G144677
TU182286 other downstream 4768562 12780580 ~ 12781170 (+) True G144940
TU183002 other downstream 7372225 15384243 ~ 15384612 (+) False AMCG00005105
TU183561 other downstream 9753239 17765257 ~ 17771525 (+) True G145932
TU184056 other downstream 11567555 19579573 ~ 19579807 (+) True G146305

Expression Profile