RNA id: TU181198



Basic Information


Item Value
RNA id TU181198
length 243
lncRNA type sense_over
GC content 0.40
exon number 2
gene id G144082
representative True

Chromosome Information


Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 8793677 ~ 8825780 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


aaaaaaaaaaaaaaaaaaaaagaaaaaaaaaaaaaaaaacggaaaaaaaaaactaaaaaataataaaaggtgcCCAGGTCCTTTACAGCTGAGGCAACTTATCCACAGGTGTGTCGAATTTGAAGTCCGGTGGGAAGAGGTCAGCAGCGCGGGGGTAGATGAGTCTGTAGGACTGTCTGATTGTGACATCCGCAACTCCGGCAATGTCTCCAATCTCTGAAAGACAGGGTGAGAAATATGACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU181094 lncRNA upstream 692338 8101026 ~ 8101339 (+) True G143997
TU181055 lncRNA upstream 744367 7978646 ~ 8049310 (+) True G143962
TU181065 lncRNA upstream 781659 8009531 ~ 8012018 (+) True G143970
TU181008 lncRNA upstream 919243 7873613 ~ 7874434 (+) True G143923
TU180890 lncRNA upstream 1101413 7672816 ~ 7692264 (+) False AMCG00004868
TU181233 lncRNA downstream 26465 8852245 ~ 8852446 (+) True G144111
TU181264 lncRNA downstream 314862 9140642 ~ 9141904 (+) True G144136
TU181265 lncRNA downstream 319674 9145454 ~ 9145853 (+) True G144137
TU181268 lncRNA downstream 344215 9169995 ~ 9170249 (+) True G144139
TU181270 lncRNA downstream 347125 9172905 ~ 9173149 (+) True G144141
AMCG00004892 mRNA upstream 264943 8514010 ~ 8528734 (+) True AMCG00004892
AMCG00004891 mRNA upstream 324907 8459350 ~ 8468770 (+) True AMCG00004891
AMCG00004897 mRNA upstream 447787 8333771 ~ 8345890 (+) True AMCG00004897
AMCG00004896 mRNA upstream 470634 8298457 ~ 8323043 (+) True AMCG00004896
AMCG00004895 mRNA upstream 498992 8289228 ~ 8294685 (+) True AMCG00004895
AMCG00004903 mRNA downstream 28479 8854259 ~ 8879736 (+) True AMCG00004903
AMCG00004905 mRNA downstream 64189 8889969 ~ 8906596 (+) True AMCG00004905
AMCG00004904 mRNA downstream 82051 8907831 ~ 8917401 (+) True AMCG00004904
AMCG00004910 mRNA downstream 323732 9149512 ~ 9198176 (+) True AMCG00004910
AMCG00004909 mRNA downstream 375345 9201125 ~ 9211479 (+) True AMCG00004909
TU180912 other upstream 1062677 7729389 ~ 7731000 (+) False AMCG00004870
TU180621 other upstream 3369556 5423703 ~ 5424121 (+) True G143626
TU180426 other upstream 4421588 4371709 ~ 4372089 (+) True G143471
TU180351 other upstream 4684022 4109022 ~ 4109655 (+) True G143404
TU180311 other upstream 4843840 3949426 ~ 3949837 (+) True G143366
TU181952 other downstream 2836901 11662681 ~ 11663368 (+) True G144677
TU182286 other downstream 3954800 12780580 ~ 12781170 (+) True G144940
TU183002 other downstream 6558463 15384243 ~ 15384612 (+) False AMCG00005105
TU183561 other downstream 8939477 17765257 ~ 17771525 (+) True G145932
TU184056 other downstream 10753793 19579573 ~ 19579807 (+) True G146305

Expression Profile